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Table 1 Empirical statistics of simulated datasets used in this study

From: ASTRID: Accurate Species TRees from Internode Distances

Dataset

# genes

# taxa

ILS level (AD%)

# sites

ref.

Avian very high ILS (0.5X)

1000

48

60 (VH)

500

[22]

Avian high ILS (1X)

1000

48

47 (H)

250-1500

[22]

Avian moderate (2X)

1000

48

29 (M)

500

[22]

Mammalian high ILS (0.5X)

200

37

50 (H)

250-1000

[22]

Mammalian moderate ILS (1X)

200

37

29 (M)

250-1000

[22]

Mammalian low ILS (2X)

200

37

21 (L)

250-1000

[22]

10-taxon very high ILS

200

10

89(VH)

100

[23]

10-taxon high ILS

200

10

48 (H)

100

[23]

15-taxon clocklike

1000

15

82 (VH)

100-1000

[23]

ASTRAL-2 500K-1e6 (MC1)

1000

200

69 (VH)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC2)

1000

200

33 (M)

300-1500

[8]

ASTRAL-2 10M-1e6 (MC3)

1000

200

21 (L)

300-1500

[8]

ASTRAL-2 500K-1e7 (MC4)

1000

200

68 (VH)

300-1500

[8]

ASTRAL-2 2M-1e7 (MC5)

1000

200

34 (M)

300-1500

[8]

ASTRAL-2 10M-1e7 (MC6)

1000

200

9 (L)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC7)

1000

10

17 (L)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC8)

1000

50

30 (M)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC9)

1000

100

34 (M)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC10)

1000

500

34 (M)

300-1500

[8]

ASTRAL-2 2M-1e6 (MC11)

1000

1000

35 (M)

300-1500

[8]

  1. The ILS level is measured by the average Robinson-Foulds distance (AD) between the true gene trees and the species tree, expressed as a percentage; ILS levels are then classified as low (L), moderate (M), high (H), or very high (VH).