Table 2 Target PSMs output by PeptideProphet, Percolator, and CRanker.
From: An adaptive classification model for peptide identification
Data | Method | Total | TP | FP |
|---|---|---|---|---|
| Â | PepProphet | 582 | 566 | 16 |
ups1 | Percolator | 450 | 438 | 12 |
| Â | CRanker | 601 | 585 | 16 |
| Â | PepProphet | 1481 | 1443 | 38 |
yeast | Percolator | 1429 | 1394 | 35 |
| Â | CRanker | 1491 | 1455 | 36 |
| Â | PepProphet | 16025 | 15638 | 387 |
tal08 | Percolator | 14725 | 14371 | 354 |
| Â | CRanker | 16806 | 16390 | 416 |
| Â | PepProphet | 34035 | 33233 | 802 |
orbit-mips | Percolator | 34118 | 33270 | 848 |
| Â | CRanker | 35003 | 34123 | 880 |
| Â | PepProphet | 36542 | 35673 | 869 |
orbit-nomips | Percolator | 36962 | 36096 | 866 |
| Â | CRanker | 37337 | 36416 | 921 |
| Â | PepProphet | 123908 | 120961 | 2947 |
velos-mips | Percolator | 125701 | 122568 | 3133 |
| Â | CRanker | 125783 | 122624 | 3159 |
| Â | PepProphet | 180182 | 175789 | 4393 |
velos-nomips | Percolator | 178082 | 173719 | 4363 |
| Â | CRanker | 183492 | 178900 | 4592 |