Skip to main content

Table 4 Overlap of identified target PSMs by PeptideProphet, Percolator and CRanker.

From: An adaptive classification model for peptide identification

  PSMs shared between Peptide-Prophet and CRanker % Peptide- Prophet shared by CRanker PSMs shared between Percolator and CRanker % Percolator shared by CRanker PSMs shared between Percolator and Peptide- Prophet % Percolator shared by Peptide- Prophet
ups1 497 87.8 390 89.0 404 92.2
yeast 1402 97.2 1289 92.5 1272 92.5
tal08 15362 98.2 13521 94.1 13474 93.8
orbit-mips 32264 97.1 31017 93.2 30704 93.3
orbit-nomips 34691 97.3 32788 90.8 32777 90.8
velos-mips 118540 98.0 112456 91.8 111801 91.2
velos-nomips 171228 97.4 165140 95.0 164470 94.6