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Table 1 Comparisons of the number of predicted transcripts in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

  mouse rat
k_c Oases Mutual Oases Mutual
25_3 51218 40657 100317 56409
25_5 27873 18511 33396 22538
25_10 10557 6104 7669 5639
31_3 48841 29778 82090 38141
31_5 25947 14073 28047 15981
31_10 8224 3954 5145 3485
  1. Note that these numbers are not directly comparable between Oases and Mutual since the predicted transcripts from Mutual are obtained by extending similar paths that appear in the two organisms with an e-value cutoff of 0.1 from bl2seq, while the predicted transcripts from Oases are obtained independently in each organism without such constraints.