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Table 10 Comparisons of the number of predicted shared transcripts that are uniquely mapped or translocated as reported by GMAP in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

 

mouse(10−7)

 

human(10−7)

 

Oases

Mutual

 

Oases

Mutual

k _ c

unique

transloc

unique

transloc

k _ c

unique

transloc

unique

transloc

25_3

18157

531 (0.029)

21931

1209 (0.055)

25_3

19912

224 (0.011)

25142

592 (0.024)

25_5

10036

393 (0.039)

10760

763 (0.071)

25_5

10353

150 (0.014)

11088

334 (0.030)

25_10

3582

203 (0.057)

3838

420 (0.109)

25_10

3114

78 (0.025)

3281

221 (0.067)

31_3

12899

196 (0.015)

14105

370 (0.026)

31_3

14748

65 (0.004)

16499

126 (0.008)

31_5

7084

147 (0.021)

7392

302 (0.041)

31_5

8101

43 (0.005)

8536

94 (0.011)

31_10

2029

93 (0.046)

2095

167 (0.080)

31_10

1858

30 (0.016)

1919

58 (0.030)

 

mouse(10 −20 )

 

human(10 −20 )

 

Oases

Mutual

 

Oases

Mutual

k _ c

unique

transloc

unique

transloc

k _ c

unique

transloc

unique

transloc

25_3

13313

499 (0.037)

15285

1073 (0.070)

25_3

14928

195 (0.013)

17259

518 (0.030)

25_5

7877

373 (0.047)

8286

713 (0.086)

25_5

8301

130 (0.016)

8638

315 (0.036)

25_10

2980

188 (0.063)

3152

400 (0.127)

25_10

2699

73 (0.027)

2822

211 (0.075)

31_3

8736

181 (0.021)

9504

330 (0.035)

31_3

10690

57 (0.005)

11621

106 (0.009)

31_5

5183

137 (0.026)

5408

281 (0.052)

31_5

6325

35 (0.006)

6580

84 (0.013)

31_10

1618

91 (0.056)

1671

161 (0.096)

31_10

1591

19 (0.012)

1623

55 (0.034)

  1. Notations are the same as in Table 9.