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Table 10 Comparisons of the number of predicted shared transcripts that are uniquely mapped or translocated as reported by GMAP in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

  mouse(10−7)   human(10−7)
  Oases Mutual   Oases Mutual
k _ c unique transloc unique transloc k _ c unique transloc unique transloc
25_3 18157 531 (0.029) 21931 1209 (0.055) 25_3 19912 224 (0.011) 25142 592 (0.024)
25_5 10036 393 (0.039) 10760 763 (0.071) 25_5 10353 150 (0.014) 11088 334 (0.030)
25_10 3582 203 (0.057) 3838 420 (0.109) 25_10 3114 78 (0.025) 3281 221 (0.067)
31_3 12899 196 (0.015) 14105 370 (0.026) 31_3 14748 65 (0.004) 16499 126 (0.008)
31_5 7084 147 (0.021) 7392 302 (0.041) 31_5 8101 43 (0.005) 8536 94 (0.011)
31_10 2029 93 (0.046) 2095 167 (0.080) 31_10 1858 30 (0.016) 1919 58 (0.030)
  mouse(10 −20 )   human(10 −20 )
  Oases Mutual   Oases Mutual
k _ c unique transloc unique transloc k _ c unique transloc unique transloc
25_3 13313 499 (0.037) 15285 1073 (0.070) 25_3 14928 195 (0.013) 17259 518 (0.030)
25_5 7877 373 (0.047) 8286 713 (0.086) 25_5 8301 130 (0.016) 8638 315 (0.036)
25_10 2980 188 (0.063) 3152 400 (0.127) 25_10 2699 73 (0.027) 2822 211 (0.075)
31_3 8736 181 (0.021) 9504 330 (0.035) 31_3 10690 57 (0.005) 11621 106 (0.009)
31_5 5183 137 (0.026) 5408 281 (0.052) 31_5 6325 35 (0.006) 6580 84 (0.013)
31_10 1618 91 (0.056) 1671 161 (0.096) 31_10 1591 19 (0.012) 1623 55 (0.034)
  1. Notations are the same as in Table 9.