Table 3 Comparisons of the number of predicted shared transcripts (shared) and the number of predicted shared transcripts that have BLAST hits from each organism to its known transcriptome database (found) in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 10−7 and 10−20 .
|  | mouse(10−7 ) |  | rat(10−7 ) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Oases | Mutual | Â | Oases | Mutual | ||||
k _ c | shared | found | shared | found | k _ c | shared | found | shared | found |
25_3 | 27671 | 26756 (97%) | 35230 | 34011 (97%) | 25_3 | 24489 | 21844 (89%) | 39287 | 34298 (87%) |
25_5 | 12729 | 12366 (97%) | 14924 | 14520 (97%) | 25_5 | 10092 | 9245 (92%) | 15287 | 13639 (89%) |
25_10 | 3955 | 3823 (97%) | 4589 | 4465 (97%) | 25_10 | 2994 | 2835 (95%) | 3955 | 3705 (94%) |
31_3 | 22635 | 22046 (97%) | 25035 | 24396 (97%) | 31_3 | 20917 | 19008 (91%) | 27484 | 24744 (90%) |
31_5 | 10229 | 10028 (98%) | 11039 | 10825 (98%) | 31_5 | 8398 | 7815 (93%) | 11225 | 10332 (92%) |
31_10 | 2597 | 2545 (98%) | 2871 | 2815 (98%) | 31_10 | 2013 | 1939 (96%) | 2489 | 2382 (96%) |
|  | mouse(10 −20 ) |  | rat(10 −20 ) | ||||||
| Â | Oases | Mutual | Â | Oases | Mutual | ||||
k _ c | shared | found | shared | found | k _ c | shared | found | shared | found |
25_3 | 22936 | 22290 (97%) | 28705 | 27881 (97%) | 25_3 | 19282 | 17719 (92%) | 29923 | 26898 (90%) |
25_5 | 10904 | 10608 (97%) | 12648 | 12336 (98%) | 25_5 | 8242 | 7669 (93%) | 12087 | 10999 (91%) |
25_10 | 3377 | 3253 (96%) | 3901 | 3790 (97%) | 25_10 | 2510 | 2388 (95%) | 3254 | 3070 (94%) |
31_3 | 18052 | 17627 (98%) | 20026 | 19567 (98%) | 31_3 | 15835 | 14699 (93%) | 20943 | 19264 (92%) |
31_5 | 8429 | 8261 (98%) | 9157 | 8964 (98%) | 31_5 | 6623 | 6218 (94%) | 8886 | 8251 (93%) |
31_10 | 2196 | 2150 (98%) | 2438 | 2386 (98%) | 31_10 | 1681 | 1629 (97%) | 2041 | 1959 (96%) |