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Table 4 Comparisons of the number of predicted shared transcripts and the number of predicted shared transcripts that have BLAST hits from each organism to its known transcriptome database in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

 

mouse(10−7)

 

human(10−7 )

 

Oases

Mutual

 

Oases

Mutual

k _ c

shared

found

shared

found

k _ c

shared

found

shared

found

25_3

20763

20406 (98%)

25630

25189 (98%)

25_3

22499

22084 (98%)

28364

27911 (98%)

25_5

11914

11685 (98%)

12956

12784 (99%)

25_5

12037

11786 (98%)

12806

12643 (99%)

25_10

4644

4520 (97%)

5226

5114 (98%)

25_10

3844

3762 (98%)

4121

4047 (98%)

31_3

14631

14440 (99%)

16226

16041 (99%)

31_3

16498

16348 (99%)

18482

18318 (99%)

31_5

8351

8241 (99%)

8920

8825 (99%)

31_5

9250

9171 (99%)

9841

9753 (99%)

31_10

2727

2686 (98%)

2924

2887 (99%)

31_10

2326

2308 (99%)

2438

2420 (99%)

 

mouse(10 −20 )

 

human(10 −20 )

 

Oases

Mutual

 

Oases

Mutual

k _ c

shared

found

shared

found

k _ c

shared

found

shared

found

25_3

15532

15335 (99%)

18418

18165 (99%)

25_3

17014

16799 (99%)

19840

19558 (99%)

25_5

9534

9356 (98%)

10249

10137 (99%)

25_5

9718

9541 (98%)

10120

10000 (99%)

25_10

3965

3854 (97%)

4452

4358 (98%)

25_10

3344

3278 (98%)

3593

3529 (98%)

31_3

10165

10045 (99%)

11250

11127 (99%)

31_3

12052

11960 (99%)

13138

13043 (99%)

31_5

6262

6183 (99%)

6728

6654 (99%)

31_5

7267

7216 (99%)

7615

7557 (99%)

31_10

2245

2209 (98%)

2419

2385 (99%)

31_10

2003

1989 (99%)

2083

2069 (99%)

  1. Notations are the same as in Table 3.