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Table 4 Comparisons of the number of predicted shared transcripts and the number of predicted shared transcripts that have BLAST hits from each organism to its known transcriptome database in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

  mouse(10−7)   human(10−7 )
  Oases Mutual   Oases Mutual
k _ c shared found shared found k _ c shared found shared found
25_3 20763 20406 (98%) 25630 25189 (98%) 25_3 22499 22084 (98%) 28364 27911 (98%)
25_5 11914 11685 (98%) 12956 12784 (99%) 25_5 12037 11786 (98%) 12806 12643 (99%)
25_10 4644 4520 (97%) 5226 5114 (98%) 25_10 3844 3762 (98%) 4121 4047 (98%)
31_3 14631 14440 (99%) 16226 16041 (99%) 31_3 16498 16348 (99%) 18482 18318 (99%)
31_5 8351 8241 (99%) 8920 8825 (99%) 31_5 9250 9171 (99%) 9841 9753 (99%)
31_10 2727 2686 (98%) 2924 2887 (99%) 31_10 2326 2308 (99%) 2438 2420 (99%)
  mouse(10 −20 )   human(10 −20 )
  Oases Mutual   Oases Mutual
k _ c shared found shared found k _ c shared found shared found
25_3 15532 15335 (99%) 18418 18165 (99%) 25_3 17014 16799 (99%) 19840 19558 (99%)
25_5 9534 9356 (98%) 10249 10137 (99%) 25_5 9718 9541 (98%) 10120 10000 (99%)
25_10 3965 3854 (97%) 4452 4358 (98%) 25_10 3344 3278 (98%) 3593 3529 (98%)
31_3 10165 10045 (99%) 11250 11127 (99%) 31_3 12052 11960 (99%) 13138 13043 (99%)
31_5 6262 6183 (99%) 6728 6654 (99%) 31_5 7267 7216 (99%) 7615 7557 (99%)
31_10 2245 2209 (98%) 2419 2385 (99%) 31_10 2003 1989 (99%) 2083 2069 (99%)
  1. Notations are the same as in Table 3.