Table 5 Comparisons of the number of top unique BLAST hits to different transcripts from each set of predicted shared transcripts in each organism to its known transcriptome database in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 10−7 and 10−20 .
10−7 | mouse | rat | 10−20 | mouse | rat | ||||
|---|---|---|---|---|---|---|---|---|---|
k_c | Oases | Mutual | Oases | Mutual | k_c | Oases | Mutual | Oases | Mutual |
25_3 | 7780 | 8349 (+569) | 7382 | 8061 (+679) | 25_3 | 7035 | 7547 (+512) | 6608 | 7148 (+540) |
25_5 | 5310 | 5563 (+253) | 4863 | 5158 (+295) | 25_5 | 4715 | 4929 (+214) | 4319 | 4538 (+219) |
25_10 | 2361 | 2463 (+102) | 2011 | 2094 (+83) | 25_10 | 2008 | 2094 (+86) | 1769 | 1833 (+64) |
31_3 | 6645 | 6854 (+209) | 6392 | 6660 (+268) | 31_3 | 5780 | 5997 (+217) | 5527 | 5802 (+275) |
31_5 | 4286 | 4368 (+82) | 3933 | 4103 (+170) | 31_5 | 3713 | 3804 (+91) | 3454 | 3557 (+103) |
31_10 | 1705 | 1740 (+35) | 1462 | 1517 (+55) | 31 10 | 1443 | 1484 (+41) | 1287 | 1320 (+33) |