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Table 5 Comparisons of the number of top unique BLAST hits to different transcripts from each set of predicted shared transcripts in each organism to its known transcriptome database in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 107 and 10−20 .

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

10−7 mouse rat 10−20 mouse rat
k_c Oases Mutual Oases Mutual k_c Oases Mutual Oases Mutual
25_3 7780 8349 (+569) 7382 8061 (+679) 25_3 7035 7547 (+512) 6608 7148 (+540)
25_5 5310 5563 (+253) 4863 5158 (+295) 25_5 4715 4929 (+214) 4319 4538 (+219)
25_10 2361 2463 (+102) 2011 2094 (+83) 25_10 2008 2094 (+86) 1769 1833 (+64)
31_3 6645 6854 (+209) 6392 6660 (+268) 31_3 5780 5997 (+217) 5527 5802 (+275)
31_5 4286 4368 (+82) 3933 4103 (+170) 31_5 3713 3804 (+91) 3454 3557 (+103)
31_10 1705 1740 (+35) 1462 1517 (+55) 31 10 1443 1484 (+41) 1287 1320 (+33)
  1. Only the top hit with e-value below the cutoff is considered. The number in parentheses is the change by Mutual over Oases.