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Table 7 Comparisons of the number of predicted shared transcripts that are 80% full length transcripts in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 107 and 10−20 .

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

10−7 mouse rat 10−20 mouse rat
k_c Oases Mutual Oases Mutual k_c Oases Mutual Oases Mutual
25_3 1900 1840 (−60) 2066 1777 (−289) 25_3 1802 1743 (−59) 1870 1611 (−259)
25_5 1705 1677 (−28) 1739 1581 (−158) 25_5 1595 1561 (−34) 1577 1429 (−148)
25_10 1119 1097 (−22) 862 848 (−14) 25_10 984 975 (−9) 798 788 (−10)
31_3 1144 1158 (+14) 1407 1179 (−228) 31_3 1061 1077 (+16) 1226 1042 (−184)
31_5 1054 1062 (+8) 1240 1095 (−145) 31_5 966 990 (+24) 1092 978 (−114)
31_10 719 724 (+5) 662 662 (0) 31_10 638 646 (+8) 607 602 (−5)
  1. These transcripts are the ones in which 80% of the coding region is included in the best BLAST alignment from each organism to its known transcriptome database. The number in parentheses is the change by Mutual over Oases.