Table 7 Comparisons of the number of predicted shared transcripts that are 80% full length transcripts in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 10−7 and 10−20 .
10−7 | mouse | rat | 10−20 | mouse | rat | ||||
|---|---|---|---|---|---|---|---|---|---|
k_c | Oases | Mutual | Oases | Mutual | k_c | Oases | Mutual | Oases | Mutual |
25_3 | 1900 | 1840 (−60) | 2066 | 1777 (−289) | 25_3 | 1802 | 1743 (−59) | 1870 | 1611 (−259) |
25_5 | 1705 | 1677 (−28) | 1739 | 1581 (−158) | 25_5 | 1595 | 1561 (−34) | 1577 | 1429 (−148) |
25_10 | 1119 | 1097 (−22) | 862 | 848 (−14) | 25_10 | 984 | 975 (−9) | 798 | 788 (−10) |
31_3 | 1144 | 1158 (+14) | 1407 | 1179 (−228) | 31_3 | 1061 | 1077 (+16) | 1226 | 1042 (−184) |
31_5 | 1054 | 1062 (+8) | 1240 | 1095 (−145) | 31_5 | 966 | 990 (+24) | 1092 | 978 (−114) |
31_10 | 719 | 724 (+5) | 662 | 662 (0) | 31_10 | 638 | 646 (+8) | 607 | 602 (−5) |