Table 9 Comparisons of the number of predicted shared transcripts that are uniquely mapped (unique) or translocated (transloc) as reported by GMAP in the test on mouse against rat from Oases and from Mutual over different values of k and k-mer coverage cutoff c and over different e-value cutoffs 10−7 and 10−20 .
|  | mouse(10−7) |  | rat(10−7) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Oases | Mutual | Â | Oases | Mutual | ||||
k _ c | unique | transloc | unique | transloc | k _ c | unique | transloc | unique | transloc |
25_3 | 24635 | 599 (0.024) | 30713 | 1475 (0.048) | 25_3 | 21335 | 986 (0.046) | 33566 | 2237 (0.067) |
25_5 | 10718 | 436 (0.041) | 12071 | 1011 (0.084) | 25_5 | 8509 | 438 (0.051) | 12676 | 971 (0.077) |
25_10 | 2913 | 218 (0.075) | 3197 | 409 (0.128) | 25_10 | 2353 | 122 (0.052) | 3042 | 257 (0.084) |
31_3 | 20360 | 242 (0.012) | 22229 | 483 (0.022) | 31_3 | 18236 | 497 (0.027) | 23818 | 795 (0.033) |
31_5 | 8778 | 189 (0.022) | 9263 | 388 (0.042) | 31_5 | 7132 | 251 (0.035) | 9453 | 388 (0.041) |
31_10 | 1914 | 99 (0.052) | 2026 | 176 (0.087) | 31_10 | 1553 | 65 (0.042) | 1888 | 113 (0.060) |
|  | mouse(10 −20 ) |  |  | rat(10 −20 ) |  |  | |||
| Â | Oases | Mutual | Â | Oases | Mutual | ||||
k _ c | unique | transloc | unique | transloc | k _ c | unique | transloc | unique | transloc |
25_3 | 20209 | 544 (0.027) | 24662 | 25 3 | 25_3 | 16880 | 746 (0.044) | 25851 | 1536 (0.059) |
25_5 | 9070 | 396 (0.044) | 10067 | 25 5 | 25_5 | 7021 | 332 (0.047) | 10097 | 718 (0.071) |
25_10 | 2431 | 188 (0.077) | 2631 | 25 10 | 25_10 | 1977 | 98 (0.050) | 2499 | 214 (0.086) |
31_3 | 16077 | 213 (0.013) | 17610 | 31 3 | 31_3 | 13866 | 376 (0.027) | 18290 | 516 (0.028) |
31_5 | 7136 | 156 (0.022) | 7538 | 31 5 | 31_5 | 5656 | 177 (0.031) | 7572 | 243 (0.032) |
31_10 | 1590 | 85 (0.053) | 1701 | 31 10 | 31_10 | 1299 | 51 (0.039) | 1559 | 83 (0.053) |