Skip to main content

Table 2 Ascertaining possible functional roles for k-mers.

From: Reference-free inference of tumor phylogenies from single-cell sequencing data

Examples of 25-mers that align to the ERBB2 gene

Location on ERBB2 gene (bp)

TCACCCAGGTTGGAGTGCAGTGGCA

9592-9616

CACACCTGTAACCCCAGCACTTTGG

16172-16196

CACTCTAGCCTGGGCGACAGAGCGA

36185-36161

  1. Column 1 lists 3 25-mers that aligned to the ERBB2 gene with a single-base difference in DNA sequence. ERBB2 is one of the most frequently amplified genes in primary breast cancer and a widely recognized tumor progression marker.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us