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Table 4 Performance of different peak detection algorithms on average spectra in terms of sensitivity, FDR and F1-score.

From: A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model

Method

Sensitivity (%)

FDR (%)

F1-score (%)

CWT

65.84 ± 0.64

1.67 ± 0.45

78.81 ± 0.44

Cromwell

74.40 ± 0.99

38.76 ± 0.59

67.11 ± 0.62

LARK-HP

65.73 ± 0.85

20.75 ± 1.72

71.58 ± 0.85

LARK-MA

56.16 ± 0.57

17.65 ± 1.75

66.59 ± 0.75

New Algorithm

68.96 ± 0.72

14.09 ± 0.47

76.46 ± 0.54

  1. Values are expressed as mean ± SE.
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BMC Genomics

ISSN: 1471-2164

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