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Table 2 Cooperative miRNA modules in which miRNAs down-regulate genes.

From: Investigation of microRNAs in mouse macrophage responses to lipopolysaccharide-stimulation by combining gene expression with microRNA-target information

Cluster

Score

Nodes

Edges

miRNAs

1

22.667

34

374

Mir129-1, Mir19a, Mirlet7i, Mir466l, Mir1912, Mirlet7e, Mir19b-2, Mir1961, Mir98, Mir350, Mir466n, Mirlet7d, Mir129-2, Mir1192, Mirlet7f-1, Mirlet7c-1, Mirlet7a-1, Mirlet7a-2, Mir96, Mirlet7c-2, Mir669m-2, Mir669m-1, Mir291a, Mir7-1, Mir497, Mir335, Mirlet7f-2, Mir19b-1, Mir204, Mir875, Mir883a, Mirlet7g, Mir743b, Mir743

2

14.364

34

237

Mir351, Mir5615-2, Mir93, Mirlet7b, Mir876, Mir470, Mir17, Mir677, Mir1983, Mir3063, Mir9-2, Mir320, Mir495, Mir9-3, Mir203, Mir182, Mir672, Mir449a, Mir488, Mir26a-2, Mir9-1, Mir330, Mir669k, Mir20b, Mir106a, Mir128-1, Mir466d, Mir466i, Mir218-1, Mir539, Mir883b, Mir153, Mir20a, Mir292

3

5

5

10

Mir465c-1, Mir465c-2, Mir465, Mir465b-2, Mir465b-1

4

4.75

17

38

Mir362, Mir128-2, Mir147, Mir338, Mir412, Mir125a, Mir322, Mir1941, Mir200b, Mir125b-2, Mir3097, Mir34b, Mir370, Mir125b-1, Mir133a-1, Mir133a-2, Mir1298

5

4.5

5

9

Mir124a-3, Mir5624, Mir124a-1, Mir673, Mir124a-2

6

3.333

4

5

Mir667, Mir103-2, Mir3078, Mir107

7

3.2

6

8

Mir5627, Mir3090, Mir5623, Mir346, Mir3087, Mir3113

8

3

3

3

Mir24-2, Mir149, Mir24-1

  1. Cluster Score Nodes Edges miRNAs