Figure 3

The evaluation using regulatory interactions between transcription factors and genes for two kinds of inferred GINs: one kind using our framework, and the other using PCC on the first TCGxCC datasets (i.e., the first cell cycle data) of elu (1CC elu for short), cdc28 (1CC cdc28 for short) and alpha30 (1CC alpha30 for short). 'Pattern' represents an integrative reliable GIN. The subfigure (a) uses global recall, while the subfigure (b) uses local recall. Global recall usually decreases when occ increases from a smaller value (11) to a larger value (12) and len from 0.25 to 0.3 and then to 0.35, while local recall does not have this relation. Thus, there are lines and curves in (a), but not in (b).