Inference of gene interaction networks using conserved subsequential patterns from multiple time course gene expression datasets

Table 2 The number (indicated in the second column in a descending order) of interactions of genes which co-occur in those biopathways.

Pathway name	# of gene interactions
Metabolic pathways	192
Cell cycle - yeast	69
Ribosome biogenesis in Eukaryotes	42
Ribosome	33
Meiosis - yeast	31
Biosynthesis of secondary metabolites	27
Cell Cycle and Cell Division	24
Purine metabolism	21
Cytoplasmic Ribosomal Proteins	20
DNA replication	20
Pyrimidine metabolism	16
Nucleotide excision repair	10
Mismatch repair	8
Protein processing in endoplasmic reticulum	8
Base excision repair	7
N-Glycan biosynthesis	6
Oxidative phosphorylation	5

The reliable GIN used here is associated with occ = 12 and the percentage of len equal to 0.25.

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