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Table 3 Functional enrichment analysis: The statistics of the percentage of genes in each gene group where genes are associated with a same transcription factor in a given GIN.

From: Inference of gene interaction networks using conserved subsequential patterns from multiple time course gene expression datasets

p value

Biological Processes

Cellular Components

Molecular Functions

 

reliable GIN

PCC elu1 GIN

reliable GIN PCC

elu 1 GIN

reliable GIN

PCC elu1 GIN

< 0.00001

0.14 ± 0.23

0.09 ± 0.20

0.12 ± 0.20

0.10 ± 0.22

0.02 ± 0.08

0.00 ± 0.00

< 0.0001

0.23 ± 0.27

0.11 ± 0.21

0.14 ± 0.21

0.11 ± 0.22

0.04 ± 0.11

0.00 ± 0.02

< 0.001

0.27 ± 0.32

0.19 ± 0.29

0.22 ± 0.26

0.21 ± 0.31

0.08 ± 0.16

0.03 ± 0.12

< 0.01

0.33 ± 0.36

0.28 ± 0.32

0.31 ± 0.35

0.26 ± 0.37

0.14 ± 0.21

0.07 ± 0.19

  1. 1: the PCC 1CC elu GINs. In the format of XXX ± YYY, XXX(YYY) is the mean(standard deviation) of the percentages of genes in gene groups which have significant GO terms under a given p-value.
  2. Each gene group may be associated with several significant GO terms. The largest percentage of genes is used for a gene group. If a gene group has no significant GO term, the percentage is 0.