Table 1 Performance comparison of MTP predictors on the independent test set
Method | Acc (%) | Sensitivity (%) | Specificity (%) | MCC |
|---|---|---|---|---|
Bayes-AAC | 50.00 | 28.33 | 93.33 | 0.25 |
Bayes-DPC | 44.44 | 23.33 | 86.67 | 0.12 |
Bayes-AAindex | 73.33 | 80.00 | 60.00 | 0.40 |
Bayes-PSSM | 65.00 | 70.83 | 53.33 | 0.24 |
J48-AAC | 66.67 | 58.33 | 83.33 | 0.40 |
J48-DPC | 59.44 | 57.50 | 63.33 | 0.20 |
J48-AAindex | 69.44 | 75.00 | 58.33 | 0.33 |
J48-PSSM | 69.44 | 78.33 | 51.67 | 0.30 |
KNN-AAC(k = 7) | 71.67 | 72.50 | 70.00 | 0.41 |
KNN-DPC (k = 5) | 69.44 | 81.67 | 45.00 | 0.28 |
KNN-AAindex (k = 7) | 75.00 | 82.50 | 60.00 | 0.43 |
KNN-PSSM (k = 13) | 76.67 | 89.17 | 51.67 | 0.45 |
SVM-AAC | 61.67 | 91.80 | 46.22 | 0.38 |
SVM-DPC | 70.56 | 93.51 | 53.40 | 0.49 |
SVM-AAindex | 72.78 | 78.33 | 61.67 | 0.40 |
SVM-PSSM | 80.56 | 85.12 | 71.19 | 0.56 |
SCMMTP | 76.11 | 80.00 | 68.33 | 0.47 |
Mean | 67.78 | 72.13 | 63.38 | 0.36 |