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Table 1 Homo sapiens denisova miRNAs that differ from Homo sapiens sapiens miRNAs.

From: The evolution of Homo sapiens denisova and Homo sapiens neanderthalensis miRNA targeting genes in the prenatal and postnatal brain

    

Genome position (hg 19)

   

#

miRNA*

Ancestral state (h: human, d: Denisovan)

Difference (human/ Denisovan)**

Chromosome

Position

Strand

DB SNP ID

Allele frequency

(1000 genomes [28])

African population frequency

(1000 genomes [28]or dbSNP 141 [29])

Homo sapiens denisova miRNA mutations common to previously observed human miRNA polymorphisms

1

{hsa-mir-1178}

d

{A/G}

12

120151493

-

rs7311975

C:0.1382

0.4191

2

{hsa-mir-1252}

d

{A/G}

12

79813049

+

rs115256251

G:0.0032

0.0098

3

{hsa-mir-1269a}

d

{G/A}

4

67142620

+

rs73239138

A: 0.3942

0.7277

4

{hsa-mir-146a}

d

{C/G}

5

159912418

+

rs2910164

C:0.3815

0.475(YRI)

5

{hsa-mir-2682 (3p)}

d

{G/A}

1

98510847

-

rs74904371

T:0.0208

0.0053

6

{hsa-mir-3161}

d

{-/A}

11

48118347

+

rs11382316

A:0.7599

+(BUSHMAN)

7

{hsa-mir-4804 (5p)}

d

{C/G}

5

72174432

+

rs266435

G: 0.8001

0.7269

8

{hsa-mir-608}

d

{C/G}

10

102734778

+

rs4919510

G:0.3638

0.4402

  

h

A/G

10

102734813

+

-

-

-

9

hsa-mir-3124 (3p)

d

C/A

1

249120631

+

rs115160731

A:0.0128

0.0469

10

hsa-mir-4514

h

T/C

15

81289798

-

rs116034786

G:0.0136

0.0371

11

hsa-mir-1269b

h

C/(G|C)

17

12820646

-

rs7210937

C:0.3520

0.5976

12

hsa-mir-6085

h

A/-

15

62635322

+

rs372168584

-:0.0006

0.0023

13

hsa-mir-378e

d

T/C

5

169455502

+

rs367764573

C:0.0026

0.0008

  

h

T/C

5

169455551

+

rs376752141

C:0.0026

0.0008

14

hsa-mir-662

h

T/A

16

820215

+

rs74656628

A:0.1374

0.3971

  

h

G/A

16

820249

+

rs9745376

A:0.0543

0.1921

15

hsa-mir-4463

d

-/AG

6

76138146

+

rs5877455

AG:0.7079

0.9198

16

{hsa-mir-532

(3p, 5p)}

d

{A/G}

X

49767832

+

rs456615

G:1

0.7587

17

 

d

{A/G}

X

49767835

+

rs456617

G:1

0.7587

18

{hsa-mir-943}

h

A/G

4

1988176

-

rs368905227

T: 0.0004

0

  

d

{-/AG}

4

1988188

-

rs3034718

CT: 0.2766

0.4629

  

d

{A/G}

4

1988193

-

rs1077020

C: 0.2504

0.3865

Homo sapiens denisova-specific mutations

1

hsa-mir-1321

h

G/T

X

85090839

+

-

-

 

2

hsa-mir-1909

h

G/C

19

1816168

-

-

-

 

3

hsa-mir-3143

h

T/C

6

27115417

+

-

-

 

4

hsa-mir-3152 (5p)

h

A/-

9

18573332

+

-

-

 

5

hsa-mir-3185

h

G/A

17

46801808

-

-

-

 

6

hsa-mir-4478

h

T/A

9

124882437

-

-

-

 

7

hsa-mir-4700 (3p)

h

C/T

12

121161049

+

-

-

 

8

hsa-mir-4710

h

T/C

14

105144064

-

-

-

 

9

hsa-mir-5687

h

C/T

5

54804702

-

rs545080149

A:0.0002

0.0008

10

hsa-mir-609

h

G/A

10

105978625

-

-

-

 

11

{hsa-mir-671 (3p)}

h

{C/T}

7

150935593

+

-

-

 
  1. * bold - expression in the central neural system (miRGator 3.0 data [13] and data from [14]), underline - common between H. s. d. and H. s. n.
  2. ** bold - location in mature miRNA, {} common between H. s. d. and H. s. n., italic - location in canonical seed (nucleotides 2-7) region, based on [40]