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Table 1 List of differentially expressed miRNAs common to both OpenArray analysis and miRNA-Seq.

From: Integrated analyses to reconstruct microRNA-mediated regulatory networks in mouse liver using high-throughput profiling

Category miRNA miRNA loci miRNA-Seq OpenArray
  miR-429-3p chr4:156053905-156053987:- 2.01 3.56E+00
  miR-200a-3p chr4:156054896-156054985:- 2.50 2.25E+00
  miR-200b-3p chr4:156055681-156055750:- 3.53 4.25E+00
  miR-200c-3p chr6:124718322-124718390:- 1.86 2.88E+00
  miR-182-5p chr6:30165918-30165992:- 2.12 2.41E+00
  miR-326-3p chr7:99552269-99552363:+ 2.07 1.83E+00
  miR-199a-5p chr9:21496495-21496564:- 3.39 1.10E+01
  miR-673-3p chr12: 109571990-109572080:+ 34.09 3.55E+04
  miR-337-3p chr12: 109585789-109585885:+ 22.14 9.67E+00
  miR-337-5p chr12: 109585789-109585885:+ 59.88 2.20E+01
  miR-540-3p chr12: 109586080-109586146:+ 26.89 1.04E+04
  miR-431-5p chr12: 109590447-109590537:+ 34.02 5.96E+05
  miR-127-3p chr12: 109592846-109592915:+ 61.60 1.59E+01
  miR-127-5p chr12: 109592846-109592915:+ 38.92 3.07E+01
  miR-434-3p chr12: 109594506-109594599:+ 68.55 2.98E+01
  miR-434-5p chr12: 109594506-109594599:+ 49.12 2.35E+01
  miR-136-3p chr12:109595327-109595388:+ 55.82 1.29E+01
  miR-136-5p chr12:109595327-109595388:+ 42.94 2.49E+00
  miR-379-5p chr12:109709060-109709125:+ 46.48 1.74E+01
  miR-379-3p chr12:109709060-109709125:+ 62.39 7.18E+00
  miR-411-3p chr12:109710175-109710256:+ 64.08 1.16E+01
  miR-411-5p chr12:109710175-109710256:+ 56.88 2.51E+01
Up-regulated miR-299a-5p chr12:109710638-109710700:+ 34.89 6.81E+02
  miR-329-3p chr12:109713481-109713577:+ 19.84 1.05E+04
  miR-494-3p chr12:109715318-109715402:+ 16.36 1.35E+03
  miR-1193-3p chr12:109715671-109715791:+ 33.38 1.07E+01
  miR-543-3p chr12:109717258-109717333:+ 28.07 5.30E+00
  miR-495-3p chr12:109718754-109718816:+ 31.35 2.03E+01
  miR-376c-3p chr12:109722718-109722803:+ 43.62 1.85E+01
  miR-376b-3p chr12:109723458-109723539:+ 64.47 4.21E+01
  miR-376b-5p chr12:109723458-109723539:+ 56.26 2.81E+01
  miR-376a-3p chr12:109723781-109723848:+ 12.12 2.07E+04
  miR-300-3p chr12:109724313-109724391:+ 48.31 2.87E+03
  miR-381-3p chr12:109726822-109726896:+ 59.30 2.33E+03
  miR-382-5p chr12:109733771-109733846:+ 26.07 4.62E+00
  miR-382-3p chr12:109733771-109733846:+ 16.26 4.37E+03
  miR-134-5p chr12:109734139-109734209:+ 41.55 3.29E+01
  miR-485-5p chr12:109734902-109734974:+ 10.71 1.18E+05
  miR-485-3p chr12:109734902-109734974:+ 63.49 9.91E+01
  miR-154-3p chr12:109738433-109738498:+ 63.36 8.38E+01
  miR-154-5p chr12:109738433-109738498:+ 57.20 4.12E+03
  miR-496a-3p chr12:109739119-109739197:+ 48.48 5.39E+03
  miR-541-5p chr12:109742409-109742498:+ 48.98 4.90E+01
  miR-409-5p chr12:109743158-109743236:+ 16.22 7.26E+03
  miR-409-3p chr12:109743158-109743236:+ 58.62 2.91E+01
  miR-369-3p chr12:109743418-109743496:+ 19.52 1.03E+04
  miR-369-5p chr12:109743418-109743496:+ 7.92 2.19E+03
  miR-410-3p chr12:109743715-109743795:+ 51.74 9.52E+00
Down-regulated miR-455-3p chr4:63256851-63256932:+ 0.64 4.35E-01
  miR-455-5p chr4:63256851-63256932:+ 0.66 3.85E-01
  miR-31-3p chr4:88910557-88910662:- 0.40 9.54E-02
  miR-31-5p chr4:88910557-88910662:- 0.25 8.27E-02
  miR-93-5p chr5:138165523-138165610:- 0.58 9.70E-04
  miR-339-3p chr5:139369650-139369745:- 0.57 2.59E-01
  miR-335-5p chr6:30741299-30741396:+ 0.41 3.99E-01
  miR-486b-5p chr8: 23142573-23142662:- 0.50 3.09E-01
  miR-144-3p chr11:78073005-78073070:+ 0.46 1.83E-01
  miR-451a chr11:78073170-78073241:+ 0.35 7.81E-03
  miR-345-5p chr12:108836973-108837068:+ 0.52 3.19E-01
  miR-17-5p chr14:115043671-115043754:+ 0.55 2.16E-07
  miR-19a-3p chr14:115044000-115044081:+ 0.35 4.21E-01
  miR-484 chr16:14159626-14159692:+ 0.59 6.05E-01
  miR-802-5p chr16:93369720-93369816:+ 0.17 7.01E-02
  miR-145a-5p chr18:61647825-61647894:- 0.56 1.95E-01
  miR-322-5p chrX:53054255-53054349:- 0.61 4.79E-01
  1. There are 48 up-regulated and 17 down-regulated miRNAs in 2-month-old male Mir122a-/- (KO) and WT mice. The expression ratio between the mir-122-/- and WT (KO/WT) is shown.