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Table 5 Top 25 SNPs identified by ts-RF in Parkinson case-control data set.

From: Genome-wide association data classification and SNPs selection using two-stage quality-based Random Forests

Rank SNP Gene ID Gene Symbol p-value
1 rs7170952 64927 TTC23 2.1E-44
2 rs850084 101928208 LOC 3.6E-13
3 rs832241 5789 PTPRD 6.8E-28
4 rs1469593 647946 LINC00669 1.0E-34
5 rs9383311 9972 NUP153 1.5E-28
6 rs17023875 55591 VEZT 1.4E-32
7 rs9952724 9811 CTIF 3.7E-11
8 rs3087584 2043 EPHA4 1.6E-04
9 rs10053056 831 CAST 6.4E-05
10 rs6900852 135112 NCOA7 2.0E-08
11 rs3790577 10207 INADL 2.4E-25
12 rs722571 30000 TNPO2 1.6E-09
13 rs7924316 723961 INS-IGF2 1.1E-06
14 rs4956263 9811 CTIF 2.8E-06
15 rs12680546 165829 GPR156 1.3E-04
16 rs10518765 440279 UNC13C 1.5E-05
17 rs12185438 8715 NOL4 7.3E-05
18 rs12364577 440040 LOC440040 4.4E-10
19 rs2157787 463 ZFHX3 3.2E-03
20 rs17649 6692 SPINT1 1.0E-04
21 rs6429429 10000 AKT3 1.3E-03
22 rs2346771 3084 NRG1 1.0E-02
23 rs2666781 64215 DNAJC1 4.2E-04
24 rs2867301 55204 GOLPH3L 3.9E-03
25 rs11819434 282973 JAKMIP3 3.8E-02
  1. Rows in bold indicate useful genes associated with neurological disorders.