Table 1 Categories of microarray samples in EXPath expression database.
From: EXPath: a database of comparative expression analysis inferring metabolic pathways for plants
Species | Stresses | # of samples | Resource | |
|---|---|---|---|---|
Arabidopsis thaliana | Abiotic stress | Cold stress | 298 | AtGenExpress [26] NASCArrays [18] |
| Â | Â | Drought stress | Â | Â |
| Â | Â | Genotoxic stress | Â | Â |
| Â | Â | Heat stress | Â | Â |
| Â | Â | Osmotic stress | Â | Â |
| Â | Â | Oxidative stress | Â | Â |
| Â | Â | Salt stress | Â | Â |
| Â | Â | UV-B stress | Â | Â |
| Â | Â | Wounding stress | Â | Â |
| Â | Biotic stress | Phytophthora infestans | 108 | Â |
| Â | Â | P.syringae pv.tomato DC3000 | Â | Â |
| Â | Hormones | ABA | 96 | Â |
| Â | Â | Auxin | Â | Â |
| Â | Â | Brassinolide | Â | Â |
| Â | Â | Brassinosteroids | Â | Â |
| Â | Â | GA | Â | Â |
| Â | Â | Gibberellin | Â | Â |
| Â | Â | Jasmonic acid | Â | Â |
| Â | Â | Zeatin (cytokinin) | Â | Â |
Oryza sativa | Abiotic stress | Cold stress | 94 | RiceXPro [16] GEO [13] |
| Â | Â | Salt stress | Â | Â |
| Â | Â | Drought stress | Â | Â |
| Â | Biotic stress | Agrobacterium tumefaciens | 161 | Â |
| Â | Â | Magnaporthe oryzae | Â | Â |
| Â | Â | Magnaporthe oryzae strain Guy11 | Â | Â |
| Â | Â | Meloidogyne graminicola | Â | Â |
| Â | Â | Striga hermonthica | Â | Â |
| Â | Â | X. oryzae pv. oryzae | Â | Â |
| Â | Â | X. oryzae pv. oryzicola | Â | Â |
| Â | Hormones | Abscisic acid | 138 | Â |
| Â | Â | Auxin | Â | Â |
| Â | Â | Brassinosteroid | Â | Â |
| Â | Â | Cytokinin | Â | Â |
| Â | Â | Gibberellin | Â | Â |
| Â | Â | Jasmonic acid | Â | Â |
Zea mays | Abiotic stress | Acid soil | 64 | GEO [13] |
| Â | Â | Drought | Â | Â |
| Â | Â | Waterlogging | Â | Â |
| Â | Biotic stress | Colletotrichum graminicola | 92 | Â |
| Â | Â | Meloidogyne incognita | Â | Â |
| Â | Â | Phytophthora cinnamomi | Â | Â |
|  |  | Sporisorium reilianum f. sp. Zeae (Kühn) |  |  |
| Â | Â | Ustilago maydis | Â | Â |
| Â | Hormones | GA3 | 6 | Â |
| Â | Â | IAA | Â | Â |