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Table 2 Occurrence of ten most frequent high-scoring 7-mers in positive probe sequences for each TF (only 7-mers with a predicted probability of binding > 0.85 are considered.)

From: A structure-based Multiple-Instance Learning approach to predicting in vitrotranscription factor-DNA interaction

Cebpb   Esr1   Foxo1   Foxo4   Foxp2  
GATTGCA 48 AGTCAAG 9 ACAAACA 53 GATAAAC 30 TGTATAC 32
TGTTGCA 43 ATGATCT 7 TGTTATT 52 AATAAAC 29 TGTTGTA 21
TATTGCG 42 ACGTCGA 6 TGTTTTT 47 CTATTTA 27 TGTGTAC 20
CATTGCA 39 ACGTTCT 5 TGTTTGT 44 AATAAAT 23 CTTGATA 12
CATTGCG 38 AGGTGCA 4 ACAACAT 41 CATAAAC 22 AATATCC 10
GATTGCG 35 ATGTTCT 4 TGTTGAT 41 GATAAAT 21 TGTGCTT 10
TTTTGCA 35 ACGATAT 3 TGTTATC 32 CATAAAT 19 TCTGTTC 10
CGTTGCA 33 AGTCAGC 3 ACAATAA 31 CTATTTG 11 ACTATCC 9
TTGCGAA 26 ACGCCCT 2 AAACAGG 21 GTATTTC 7 ATTATCC 9
Total 339 Total 43 Total 362 Total 189 Total 133
Irf2   Mecp2   Pou3f1   Sp1   Tcf3  
TTTCATT 58 CACACAG 24 TTAATTA 62 TCCGCCC 38 CACCTGG 60
TTTCGAT 56 ACACAGG 24 CTAATTA 60 ACCGCCC 35 CACCTGA 43
TTTCGGT 56 GACACAG 17 ATTAATT 57 TGGGCGG 30 TCAGCTG 16
TTTCGCT 54 ACACAGC 15 GTAATTA 53 GCCGCCC 26 GAATGCA 13
TTTCACT 53 TACACAG 13 ATTAATA 50 GGGCGGG 23 CACCAGG 8
TTTCAGT 46 ACACGCT 13 ATTAATG 46 TACTCCA 14 TCGTCAC 7
TTTTCGT 46 ACACGGC 13 TATAATT 43 TCTGGGC 11 CACCAGA 5
TTTCTAT 43 TAAAGTA 10 ATTATTA 42 TGGGAGG 11 GCCAGAA 3
TTTTCAT 41 CACTGAC 9 AATAATT 40 GGGAGGG 10 TCAGCTT 3
Total 453 Total 138 Total 453 Total 198 Total 158
Egr2   Foxo3   Gmeb2   Nr2c1   Tbx3  
CACCCAC 60 GCTGTTT 22 GTACGTA 68 ATGACCC 61 TAGGTGT 32
CTCCCAC 56 CTTATTT 21 TGACGTA 65 GTGACCC 60 AAGGTGT 30
GGCCCAC 47 AATATTT 20 GACGTAA 63 TTGACCC 60 CAGGTGT 23
AGCCCAC 43 GTTATTT 20 TACGTAC 63 TTGACCT 60 AGGGTGT 17
TACCCAC 42 CGTATTT 19 TTACGTC 60 GTGACCT 57 TGGGTGT 16
ATCCCAC 39 TCTATTT 19 CTACGTA 59 ATGACCT 45 GAGGTGC 15
TTCCCAC 27 ATTATTT 18 TACGTCA 53 CTGACCT 41 TCATCAC 13
AACCCAC 26 CCTGTTT 17 CGACGCA 51 TGACCCT 41 CTCACCT 12
GTCCCAC 23 TATATTT 17 TGACGTT 51 CTGACCC 31 CGGGTGT 12
Total 363 Total 173 Total 533 Total 456 Total 170
Foxj2   Foxp1   Junb   Sox14   Zscan20  
ATGTTTA 48 CGTAAAC 32 TGCCACA 12 CAATTCA 34 AGGGTTT 20
AACAAAC 44 GGTAAAC 30 AGAATTC 12 CAATTGA 30 AGGGTCG 16
GTGTTTA 41 AGTAAAC 28 AATCTTT 11 CAATAGT 26 AGGGTTG 14
AACAAAT 35 TGTAAAT 27 GTCAACA 10 CAATAAA 24 TACAGGT 14
TTGTTTT 35 AGTAAAT 23 ACGTTCC 8 CAATGTA 24 AGGGTCA 10
TTGTTTG 30 CGTAAAT 18 GTCCGTA 7 CAATAAC 22 AACTCTG 10
AACAAAA 28 ACTAAAC 17 TTGCGCT 7 CAATTAC 22 AGGGTCT 9
AACAAAG 28 CAACAGG 15 CGCCACA 7 CAATACT 21 GTAAGGT 9
TACAAAC 28 GGTAAAT 15 GCCGTAC 6 CAATACA 19 ACAATAG 8
Total 317 Total 205 Total 80 Total 222 Total 110