A database for the taxonomic and phylogenetic identification of the genus Bradyrhizobium using multilocus sequence analysis

Table 3 Parameters for the execution of multiple sequence alignment algorithm.

Algorithm	Parameter	Value	Algorithm	Parameter	Value
CLUSTAL Omega	Sequence type	DNA	MUSCLE	Output format	Pearson/Fasta
CLUSTAL Omega	Output format	Pearson/Fasta	MUSCLE	Output tree	none
CLUSTAL Omega	Dealing input sequences	false	MUSCLE	Output order	aligned
CLUSTAL Omega	Mbed-like clustering guide-tree	true
CLUSTAL Omega	Mbed-like clustering iteration	true
CLUSTAL Omega	Number of combined iterations	0
CLUSTAL Omega	Max guide tree iterations	-1
CLUSTAL Omega	Max hmm iterations	-1
CLUSTAL Omega	Order	aligned

ISSN: 1471-2164