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Figure 4 | BMC Genomics

Figure 4

From: Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

Figure 4

Non-concordance of variant functional annotation. Percentage non-concordant annotation i.e. variants with annotation in only one dataset (unique) or different annotation between datasets (discordant). The variants are represented in four broad classes; CDS, other, splice and LoF with comparisons between GENCODE Comprehensive and RefSeq NXR using 1KG data (Blue), GENCODE Basic and RefSeq NXR using 1KG data (Red), GENCODE Comprehensive and RefSeq NXR using ESP data (Green), and GENCODE Basic and RefSeq NXR using 1KG data (Purple).

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