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Table 2 Cancer genome databases and resources

From: Computational methods and resources for the interpretation of genomic variants in cancer

Resource

URL

Ref

Data repositories

  

CGHub

https://cghub.ucsc.edu

[34]

COSMIC

http://cancer.sanger.ac.uk

[132]

ICGC

https://dcc.icgc.org/

[133]

TCGA

https://tcga-data.nci.nih.gov/

[38]

Cancer gene lists

  

Bushman Lab

http://www.bushmanlab.org/links/genelists

[45]

Cancer Gene Census

http://cancer.sanger.ac.uk/census

[134]

TumorPortal

http://cancergenome.broadinstitute.org/

[46]

Vogelstein List

http://goo.gl/4EmFG6 (Table S2A)

[9]

Cancer genome resources

  

CaGe

http://mgrc.kribb.re.kr/cage/

[60]

Cancer3D

http://www.cancer3d.org/

[51]

Cancer Genomics Browser

https://genome-cancer.ucsc.edu/

[59]

cBioPortal

http://www.cbioportal.org/

[57]

DriverDB

http://driverdb.ym.edu.tw/DriverDB

[61]

IntOGen

http://www.intogen.org/

[62]

NCG

http://ncg.kcl.ac.uk/

[50]