From: High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplification
Oligonucleotide | Sequence |
---|---|
OCP-1822inC | 5'GAAGAACTGGACAGATTTACTACGTGACTCGTCATGTCTCAGCTCTAGTA |
 | CGCTGATCTTAGTGTCAGGATACGGAGATGTTCTGCTTTGTC |
OCP-1822ocT | 5'GAAGAACTGGACAGATTTACTACGTATGTTGACTGGTCACACGTCGTTCT |
 | AGTACGCTTCTACTCCCTCTTGAGATGTTCTGCTTTGTT |
P1-1822inC- | 5'FAM-TCGATGACTGACGGTCATCG(DABCYL-dT)ACTAGAGCTGAGACA |
FAM | TGACGAGTC |
P1-1822ocT- | 5'TET-TCGATGACTGACGGTCATCG(DABCYL-dT)ACGACGTGTGACCAG |
TET | TCAACAT |
P2-1822inC | 5'aba-aba-GATACGGAGATGTTCTGCTTTGTC |
P2-1822ocT | 5'aba-aba-CCTCTTGAGATGTTCTGCTTTGTT |
OCP-1822C | 5'GAAGAACTGGACAGATTTACTACGTATTCTGACTCGTCATGTCTCAGCTT |
 | TAGTTTAATACGACTCACATATCCCAGATGTTCTGCTTTGTC |
OCP-1822T | 5'GAAGAACTGGACAGATTTACTACGTATTCTGACTCGTCATGTCTCAGCTT |
 | TAGTTTAATACGACTCACTATAGGGAGATGTTCTGCTTTGTT |
P2-1822C- | 5'TET-TCGATGACTGACGGTCATCG(DABCYL-dT)ATATCCCAGATGTTC |
TET | TGCTTTGTC |
P2-1822T- | 5'FAM-TCGATGACTGACGGTCATCG(DABCYL-dT)TATAGGGAGATGTTC |
FAM | TGCTTTGTT |
P1 | 5'aba-aba-CTAAAGCTGAGACATGACGAGTC |
 | Oligonucleotides used in the studies of ligation |
 | kinetics, affect of OCP 3' arm length, and ligation |
 | temperature |
CFTR M1101K | 5'CTTGTACCTGTCAACACTGCGCTGGTTCCAAAXGAGAATAGAAATGATTT |
target | T TGTCATCTT |
 | x = T in wild type and A in mutant |
OCP-M1101K23 | 5'TTTGGAACCAGCGCAGTGTTGACACTCTGACTCGTCATGTCTCAGCTTTA |
 | GTTTAATACGACTCACTATAGGGGACAAAAATCATTTCTATTCTCY |
OCP-M1101K20 | 5'TTTGGAACCAGCGCAGTGTTGACACTCTGACTCGTCATGTCTCAGCTTTA |
 | GTTTAATACGACTCACTATAGGGAAAAATCATTTCTATTCTCY |
OCP-M1101K15 | 5'TTTGGAACCAGCGCAGTGTTGACACTCTGACTCGTCATGTCTCAGCTTTA |
 | GTTTAATACGACTCACTATAGGGTCATTTCTATTCTCY |
OCP-M1101K23 | Â |
 | 5'TTTGGAACCAGCGCAGTGTTGACACTCTGACTCGTCATGTCTCAGCTTTAG |
 | TTTAATACGACTCACTATAGGGTTTCTATTCTCY |
 | Y = A in wild type and T in mutant. The number 12, |
 | 15, 20 or 23 refers to the number of base pairs the |
 | 3' end forms with the target. |