Identification of four families of yCCR4- and Mg2+-dependent endonuclease-related proteins in higher eukaryotes, and characterization of orthologs of yCCR4 with a conserved leucine-rich repeat essential for hCAF1/hPOP2 binding

Table 1 yCCR4-related proteins

Name^a	Nucleotide/Amino acid sequence ^b	Sorting procedure (this work) or reference	Corresponding genomic sequence ^c or reference
h.nocturnin	AAD56548	Dupressoir et al [21]	NT-006124
m.nocturnin	AAD56547	Dupressoir et al [21]	Dupressoir et al [21]
xe.nocturnin	AAB39495	Green & Beshare [22]	Green & Beshare [22]
d.nocturnin	AY043266	cDNA / PCR	AE003690
ym1118	NP_013588	-	NC001145
ymr285	NP_014012	-	NC001145
h3635	file 1	Databases compilation	AC016923
d3635	file 2	Databases compilation	AE003635
ce3635	CAB07271	-	Z92809
ara1g02270	At1g02270	-	NC_003070
yo1042	NP_014600	-	NC_001147
h.angel	file 3	Databases compilation	AC025707
m.angel	file 4	Databases compilation	-
ce.angel	file 5	Databases compilation	AF067946
d.angel	CAA59746	Kurzik-Dumke et al [26]	AE003461
ara3g18500	At3g18500	-	NC_003074
ara3g58580	At3g58580	-	NC_003074
ara3g58560	At3g58560	-	NC_003074
hCCR4	BAA86508	Nagase et al [27]	AC025336
mCCR4	AY043269	CDNA/PCR	-
dCCR4	AY043267	cDNA/PCR	AE003746
ceCCR4	AY043268	cDNA / PCR	Z68753
yCCR4	AAB24455	Malvar et al [10]	S50459

^a prefixes are as follows : h. Homo sapiens; m, Mus musculus; xe, Xenopus laevis; d, Drosophila melanogaster; ce, Caenorhabditis elegans; y, Saccharomyces cerevisiae; ara, Arabidopsis thaliana.^baccession numbers (including those of cDNA coding regions sequenced in this work) or file numbers (see Additional Material) for the in silico determined sequences (this work). ^c accession numbers

ISSN: 1471-2164