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Table 1 Neurofibromatosis Type 1 splicing parameters.

From: Complex splicing pattern generates great diversity in human NF1 transcripts

Exon nr.

Frame

Score acceptor

Score donor

Branch point score

Branch point position

Exon 1

IF

 

0.91

  

Exon 2

IF

1.00

0.99

0.84

38

Exon 3

IF

0.79

1.00

0.99

31

Exon 4a

OF

0.81

0.99

0.77

16

Exon 4b

OF

1.00

1.00

0.97

41

Exon 4c

OF

0.66

1.00

0.87

38

Exon 5

OF

0.99

0.99

0.74

49

Exon 6

OF

0.55

1.00

0.97

30

Exon 7

IF

0.64

0.93

0.87

23

Exon 8

IF

0.68

0.99

0.74

33

Exon 9

IF

1.00

0.99

0.90

37

Exon 9br

IF

0.05

0.96

0.82

36

Exon 10a

IF

0.98

0.99

0.92

47

Exon 10b

IF

0.98

0.86

0.98

26

Exon 10c

IF

0.99

0.99

0.82

27

Exon 11

OF

0.01

0.79

0.73

42

Exon 12a

OF

0.23

1.00

0.82

36

Exon 12b

IF

0.98

0.19

0.87

20

Exon 13

OF

0.72

0.99

0.71

28

Exon 14

OF

0.65

0.99

0.88

36

Exon 15

IF

0.97

1.00

0.88

34

Exon 16

IF

0.46

0.92

0.97

43

Exon 17

OF

0.99

1.00

0.82

35

Exon 18

IF

0.98

0.99

0.98

32

Exon 19a

IF

0.98

0.94

0.67

43

Exon 19b

IF

0.99

0.13

0.90

31

Exon 20

OF

0.96

0.79

0.82

43

Exon 21

OF

0.90

0.99

0.69

26

Exon 22

IF

0.99

0.92

0.99

23

Exon 23-1

OF

0.99

0.75

0.76

28

Exon 23-2

OF

1.00

0.98

0.74

38

Exon 23-a

IF

0.95

0.98

0.90

15

Exon 24

IF

0.99

0.41

0.87

29

Exon 25

OF

0.91

0.88

0.98

29

Exon 26

IF

0.79

1.00

0.97

20

Exon 27a

IF

0.49

0.53

0.97

31

Exon 27b

IF

0.99

0.99

0.90

27

Exon 28

OF

1.00

0.98

0.97

32

Exon 29

OF

0.81

0.97

0.82

38

Exon 30

OF

0.98

0.96

0.75

18

Exon 31

OF

0.98

0.58

0.97

19

Exon 32

IF

0.78

0.99

0.77

33

Exon 33

OF

0.99

1.00

0.74

27

Exon 34

OF

0.93

0.41

0.76

24

Exon 35

OF

0.98

1.00

0.90

46

Exon 36

OF

0.56

0.89

0.72

28

Exon 37

IF

0.09

0.99

0.82

42

Exon 38

IF

0.93

1.00

0.89

29

Exon 39

OF

0.47

0.82

0.90

29

Exon 40

IF

1.00

0.70

0.89

35

Exon 41

OF

0.98

1.00

0.84

23

Exon 42

OF

0.98

0.73

0.82

27

Exon 43

IF

0.99

0.77

0.84

14

Exon 44

OF

0.91

0.71

0.82

28

Exon 45

OF

0.52

0.96

0.74

20

Exon 46

OF

1.00

0.63

0.90

34

Exon 47

OF

0.80

1.00

0.82

11

Exon 48

OF

0.82

0.98

0.90

16

Exon 48 a

IF

0.16

0.90

0.89

32

Exon 49

OF

1.00

 

0.78

24

NF1-insE4a-2

OF

0.51

0.99

0.90

10

NF1-Δ100_835

OF

0.81

0.48

0.87

13

NF1-Δ64_1530

IF

/

/

0.82

30

NF1-Δ1744_2823

IF

/

/

0.84

20

NF1-Δ1760_2916

OF

/

/

0.83

41

NF1-Δ2410_2638

OF

0.03

1.00

0.69

24

NF1-Δ2618_2850

OF

0.99

0.95

0.82

35

NF1-Δ2671_3086

OF

/

/

0.77

20

NF1-Δ2761_3258

IF

0.81

0.07

0.77

25

NF1-Δ3315_3353

IF

/

0.13

0.80

41

NF1-3975+10325ins78

IF

0.76

0.99

0.92

32

NF1-4515-14ins14

OF

0.92

1.00

0.97

17

NF1-4772+48940ins89

OF

0.01

0.93

0.77

22

NF1-4772+15759ins51

IF

0.14

0.98

0.90

30

NF1-Δ4773_5065

OF

0.84

0.99

1.00

37

NF1-Δ5152_6937

OF

0.47

0.72

0.82

24

NF1-Δ5206_6937

OF

0.47

0.98

0.82

24

NF1-Δ5701_6946

OF

/

/

0.82

33

NF1-5749+3800ins67

OF

0.28

0.35

0.89

28

NF1-Δ6365_6479

OF

0.82

1.00

0.69

17

NF1-Δ6859_6934

OF

/

0.99

0.82

21

NF1-7126+4386ins111

IF

0.52

0.95

0.78

44

NF1-Δ7605_7675

OF

0.91

/

0.82

22

NF1-8314+1584ins77

OF

0.99

0.92

0.80

20

  1. '/': No score can be obtained by SSPNN, not even at the lowest threshold. Exons in bold were detected to skip as individual exon in some transcripts. Underscored scores have values of <0.70.