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Table 1 Amino Acid Conservation in Midasin Domains

From: Expression and genomic analysis of midasin, a novel and highly conserved AAA protein distantly related to dynein

Domain

Yeast vs Human

Giardia vs Human

Encephalitozoon vs Human

 

(percent)

(percent)

(percent)

N-terminal

19–38 (14)

NA

NA

AAA (overall)

41–57 (9)

31–47 (10)

27–42 (23)

   AAA1

30–45 (10)

29–49 (19)

26–48 (29)

   AAA2

43–61 (5)

33–50 (10)

28–50 (18)

   AAA3

65–78 (0)

50–68 (4)

50–67 (4)

   AAA4

53–67 (23)

41–62 (12)

47–65 (13)

   AAA5

58–71 (1)

49–67 (2)

34–58 (8)

   AAA6

33–51 (6)

29–47 (12)

27–45 (36)

Linker

18–34 (30)

17–33 (31)

28–61 (57)

D/E-rich

25–45 (11)

18–39 (5)

28–50 (58)

M-domain

45–65 (3)

32–53 (5)

32–53 (25)

Overall

29–46 (18)

26–44 (14)

18–29 (47)

  1. The first and second numbers in each cell give the percentages of identical and similar amino acids, respectively; the number in parenthesis gives the percentage of gaps in the alignment. All percentages were determined in pairwise alignments of the indicated midasin domain, as generated by the "Blast 2 Sequences" server at http://www.ncbi.nlm.nih.gov/blast/bl2seq/bl2.html with default parameters. In cases where the domains differed in length, identical and similar are calculated as percentages of the smaller domain; gap is calculated as a percentage of the larger domain. When necessary, dummy anchor sequences were added to NH2-termini and COOH-termini in order to force the server to align full length domains.