Table 3 Parameter estimates for the total data set consisting of 10759 genes and for the "conservative set" of 2721 genes.
Parameter | Type of effect1 | Estimate Total set | Estimate Conserved set |
|---|---|---|---|
μ | Fixed | 10.56 | 12.18 |
C (cell line 2; U2OS) | Fixed | 0.086 | -0.028 |
D (Cy3) | Fixed | -0.026 | -0.022 |
P (non-amplified) | Fixed | -0.74 | -1.14 |
CP22 (cell line 2 and non-amplified) | Fixed | -0.0043 | 0.0089 |
σ A (array) | Random | 0.28 | 0.30 |
σ B (batch) | Random | 0.041 | 0.041 |
σ C (gene) | Random | 1.36 | 0.98 |
σ AD | Random | 0.039 | 0.040 |
σ GP | Random | 0.85 | 0.79 |
σ CG | Random | 0.74 | 0.54 |
σ AG | Random | 0.44 | 0.44 |
σ DG | Random | 0.048 | 0.050 |
σ CGP | Random | 0.22 | 0.028 |
σε | Random | 0.22 | 0.22 |