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Table 1 Primer sequences for RH mapping

From: A high resolution physical and RH map of pig chromosome 6q1.2 and comparative analysis with human chromosome 19q13.1

Primer Forward sequence (5 '-3') Reverse sequence (5 '-3') Tm (°C) PCR-Product (bp) Retention IMpRH Retention IMNpRH2
BLVRB GGT TAT GAG GTG ACA GTG CCA AGA GCA CGA TGA TGG 55 148 0.14 0.38
CAPNSl TGT ATT CCT GAA CGG GAG TGC AAG AGA GGG CTA ATG 54 272 0.31 0.38
COX7A1 CAC CTA CTG GAC GAA TCC AGG TCC CGA GGT ATT ACA G 59 388 0.29 0.38
DLL3 ACC CCA GAA TCC TCG TAC AGA GCA GGA CAT AGC ATC 55 395   0.39
ECHl ACC AGG AGG TCC TGC TTG ATG TAG TTG AGG CCC TCT G 58 136 0.18 0.34
GRIK5 CAA CTT CCA GGC CCT GTC TTG ATG AGC TCG CCA ACC 60 174   0.31
ITZ001 TAG CCT TTC CTG TGG AGG ACA CAA AAG CAC ACA CCG 56 423 0.19 0.32
ITZ002 AGC CTT CAC CCA GAA GTC GAT GCA CAA GGA GCT GAG 59 287   0.36
ITZ003 CAT AGG GCT TTT CAC CAG TTC TTG CCG AAT ATC AGA G 54 297   0.28
ITZ004 TTC ACT TTG GGT CTG CTG ACC TAC CCA CTG CTA TGC 55 311 0.24 0.26
ITZ005 TCC AGA CAA GTG AGA AAC AA TTA ATT TAT AAT GCC TGG TCA 55 320 0.24 0.37
ITZ006 ATC TGC GGA GAG GAA AAG TCG TGT TTG TTG GAA TGT C 54 201   0.35
ITZ007 GTG ACT TGT AGA CCA CAG CCT ACA GAG GGA GAA TCC 55 346   0.35
ITZ008 AGC TGA GAC CAA TGC CAT ATA ATT GGG AGT TCT CGC 53 122   0.36
ITZ009 CTG CTC CTC ATT CCC ATG CCG TCT TAT GCT TGA GTC 55 187   0.40
ITZ010 CAG ATT GGG ATG AAG CTC TTA TCA ATC CCA ACA CAC C 54 114 0.22 0.37
ITZ011 AGA CGG GAA ATT GAG ACC TCC CTG TGG CAG TAA ATG 58 345   0.37
ITZ012 GTG GGG CCC TAT AAA GAC CCG AGG GTC AAA TGT CTG 56 223   0.38
ITZ013 TTG GAG GGT TCA ACT ACG GTA AAC CCG TTC ACG TTG 57 197   0.38
ITZ014 TGC CTG TTC ACG AAC CAC TCC TTG TGT GGG CTA CAG 59 100   0.32
ITZ015 AAG AAA AGG AAA AGG TTT GG TGT TCT CGC AAA CAG TGA G 58 304   0.33
ITZ016 AGA CAG GCT CCG ATG AAG AGA AAG GCT TCC CTG CTG 59 209   0.35
LGALS4 GAT GTC GCC TTC CAC TTC TGA TGA CCA GCT CGA AGG 56 142 0.18 0.35
LOC 163128 TCC AAA GAG AAG GTG GTG ATG AGG GCA TAG GAG AGC 55 170   0.36
DKFZp434H247 TTC TGC AGC TTC TTC TGC ATC GAA GTC CTG TTG CTG 54 145   0.41
MAP4K1 CCT ACC CAC GCC TAT GC CCA GCC AGC AGG AAA GC 56 136   0.33
NFKBIB CTG CAC CTG GCA GCC ATC GCT GGA GCA GCA CGC AAG 60 154   0.32
PAK4 CAG CGA GTG TCC CAT GAG CAT GGG TCA GCA GGA TGG 58 ~1600 0.19  
POLR21 ACC ACC CGT GCC AAA AG CCG CGC ACT GTG TGA CT 55 172   0.37
PPP1R14 GCT GAG CAA GCT GCA GTC GGT ACA GCT CCT CCA AGC 58 164 0.32  
PRX GCC TCA GGT GAC CTT GTC CCC ACA TCC AGC TCA AGC 58 117 0.21 0.38
RBTl CCA TGG ATG AGA CTG AGC GGC ACA GAA GAG GTT GTG 56 218   0.33
RPS16 CGC TGA TCA TCA CGA TGG GCT TTT GGG CAA GGA ACG 56 294 0.24 0.41
RYR103/104 (RYR_Promoter) TTC GTT TCT GCT TCG CC CTC TCT CCT CCC ATT TC 48 162 0.20 0.34
SEIl GAG CTG GAT GAT GCT GAG GCT GTG ATG GAG CTT GAG 56 184   0.32
SPTBN4 ATA TCC TGC CCC AAG AAG GAG GAG GTC GAC GTT TTG 58 282 0.20 0.38
SUPT5H AGG AGC TTC CCC AGG AAG TGG GTG AGG ATC GGG AAG 58 121 0.18  
SW193 TGC CAT CCT TTC TTT CAT TAC G TCA CTC TGA GGG GTC CTG AC 62 101   0.37