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Table 1 Phyletic patterns and number of proteins *

From: Application of comparative genomics in the identification and analysis of novel families of membrane-associated receptors in bacteria

Domain

Firmicutes

Proteobacteria

Actinomycetes

Cyanobacteria

Spirochetes

other

7TMR

Bhal (2); Cace; Ddeh; Dhaf (5)

Alpha– Atum; Bjap; Bmel; Ccre; Mmag (2); Rpal; Rrub (2); Smel. Beta– Rmet (2); Rsol. Gamma– Avin (4); Cbru; Mdeg (2); Paer (4); Pflu (2); Pput (2); Psyr (2); Sone (2); Xcam (2); Xf; Vvul Delta– Ddes. Unclassified– Msp (2)

-

-

Lint (14); Tpal.

Chut (13); Ctep.

7TMR-HD

Bsub; Bant; Cace (2); Cper; Ctet; Cthe; Dhaf; Efae (2); Linn; Lmon; Oihe; Tten.

Delta– Gmet. Unclassified– Msp.

-

Ana; Npun (2); Pmar (2); Syn; Ssp; Tery

Lint; Tpal.

Cpne; Caur; Fnuc (2); Tmar.

5TMR-LYT

Bsub (2); Bant (2); Cace; Ctet; Linn; Lmon; Oihe; Ooen; Saga (2); Sau (2); Sepi; Smut; Tten.

Alpha– Rsph; Rrub. Gamma– Ec (2); Styp; Sone (2); Vcho; Ypes. Delta– Ddes; Gmet.

-

-

-

Drad (2); Fnuc (2)

8TMR-UT

Llac

Alpha– Bjap (2); Ccre; Mlot; Naro; Rsph; Smel (4). Beta– Bfun; Rmet (2); Rsol. Gamma– Ec (8); Mdeg (3); Pmul; Paer; Pput (2); Styp (4); Sone(2); Sfle (2) Vcho; Vpar; Xcam (2); Ypes Delta– Ddes; Mxan Unclassified– Msp.

Cglu; Tfus; Scoe.

Ana; Syn; Ssp (3).

Lint

Caur ESV

7TMR-DISMED1

Bhal (3); Cace; Ddeh; Dhaf (4)

Alpha– Ccre Beta– Rmet (2); Rsol. Gamma– Mdeg; Xcam (2).

-

-

Lint (9)

-

7TMR-DISMED2

Dhaf

Alpha– Atum; Bjap; Bmel; Mmag (2); Rpal; Rrub (2); Smel. Gamma– Avin (4); Cbru; Mdeg (2); Paer (4); Pput (2); Psyr (2); Sone (2); Xf; Vvul. Delta– Ddes. Unclassified– Msp.

-

-

Lint (4)

Chut (13)

  1. *Firmicutes: Bant – Bacillus anthracis; Bsub – Bacillus subtilis; Bhal – Bacillus halodurans; Cace – Clostridium acetobutylicum; Cper – Clostridium perfringens; Ctet – Clostridium tetani; Cthe – Clostridium thermocellum ; Ddeh – Desulfitobacterium dehalogenans; Dhaf – Desulfitobacterium hafniense; Efae – Enterococcus faecium; Llac – Lactococcus lactis; Linn – Listeria innocua; Lmon – Listeria monocytogenes; Oihe – Oceanobacillus iheyensis; Ooen – Oenococcus oeni; Saga – Streptococcus agalactiae; Saur – Staphylococcus aureus; Sepi – Staphylococcus epidermidis; Smut – Streptococcus_mutans; Tten – Thermoanaerobacter tengcongensis. Alphaproteobacteria: Atum – Agrobacterium tumefaciens; Bjap – Bradyrhizobium japonicum; Bmel – Brucella melitensis; Ccre – Caulobacter crescentus; Mmag – Magnetospirillum magnetotacticum; Mlot – Mesorhizobium loti; Naro – Novosphingobium aromaticivorans; Rsph – Rhodobacter sphaeroides; Rpal – Rhodopseudomonas palustris; Rrub – Rhodospirillum rubrum; Smel – Sinorhizobium meliloti. Betaproteobacteria: Bfun – Burkholderia fungorum; Rmet – Ralstonia metallidurans; Rsol – Ralstonia solanacearum. Gammaproteobacteria: Avin – Azotobacter vinelandii; Cbru – Coxiella brunettii; Ec – Escherichia coli; Mdeg – Microbulbifer degradans; Pmul – Pasteurella multocida; Paer – Pseudomonas aeruginosa; Pflu – Pseudomonas fluorescens; Pput – Pseudomonas putida; Psyr – Pseudomonas syringae; Styp – Salmonella typhimurium; Sone – Shewanella oneidensis; Sfle – Shigella flexneri; Vcho – Vibrio cholerae; Vpar – Vibrio parahaemolyticus; Vvul – Vibrio vulnificus; Xcam – Xanthomonas campestris; Xf – Xylella fastidiosa; Ypes – Yersinia pestis. DeltaProteobacteria: Ddes – Desulfovibrio desulfuricans; Gmet – Geobacter metallireducens; Mxan – Myxococcus xanthus. Unclassified Proteobacteria: Msp – Magnetococcus sp. Cyanobacteria: Ana – Anabaena sp.; Npun – Nostoc punctiforme; Pmar – Prochlorococcus marinus; Syn – Synechococcus sp.; Ssp – Synechocystis sp.; Tery – Trichodesmium erythraeum. Spirochetes: Lint – Leptospira interrogans; Tpal – Treponema pallidum. Actinobacteria: Cglu – Corynebacterium glutamicum; Tfus – Thermobifida fusca; Scoe – Streptomyces coelicolor. Other:Cpne – Chlamydophila pneumoniae; Ctep – Chlorobium tepidum; Caur – Chloroflexus aurantiacus; Chut – Cytophaga hutchinsonii; Drad – Deinococcus radiodurans; ESV – Ectocarpus siliculosus virus; Fnuc – Fusobacterium nucleatum; Tmar – Thermotoga maritima. The number of proteins (if more than one) is given in parenthesis. Incomplete genomes are underlined.
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BMC Genomics

ISSN: 1471-2164

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