Skip to main content

Table 1 Genes more highly expressed in psoas than in LD

From: Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles

Gene

Psoas/LD

Homology

# of clones

Accession #

Mitochondrial origin

    

16S ribosomal RNA

2.07

97% (S)

12

AY011178

12S ribosomal RNA

2.18

100% (S)

7

AY012145

28S ribosomal RNA

2.67

99% (R)

1

V01270

Ribosomal protein S29

4.14

94% (B)

1

U66372

Ribosomal protein L23

30.05

92% (H)

1

NM_000978

Cytochrome oxidase subunit I

2.03

86% (B)

2

AF490529

Cytochrome oxidase subunit III

2.28

81% (T)

1

AF030272

Cytochrome oxidase subunit VIc

27.97

88% (H)

1

NM_004374

Cytochrome oxidase subunit VIb

2.51

96% (B)

1

X15112

NADH dehydrogenase subunit 2

2.51

77% (P)

1

AF414121

NADH dehydrogenase subunit 3

2.58

82% (B)

7

AY052631

NADH dehydrogenase subunit 6

2.15

81% (B)

4

AF416451

NADH dehydrogenase subunit B15

2.34

87% (B)

1

X64898

ATP synthase protein 6

2.1

96% (S)

2

AF190813

ATP synthase protein 8

2.17

100% (S)

1

AF039170

ATP synthase protein 9

20.55

96% (H)

1

NM_001689

tRNA

3.87

97% (S)

2

AF304202

Adenine nucleotide translocator SLC25A6

2.05

92% (H)

1

XM_114724

Sarcomeric / structural

    

Ankyrin 1

2.23

93% (H)

1

XM_016774

Tubulin alpha 1

2.68

94% (H)

1

AF141347

Non-sarcomeric

    

Pituitary tumor-transforming 1 interacting protein (tr)

2.98

84% (H)

1

BC031097

Par-6 partitioning defective 6 homolog gamma (tr)

30.36

92% (M)

1

XM_129044

TAFII140, a novel TAF component (TATA-binding protein associated factors) (tr)

2.16

94% (H)

1

AJ292190

STAF transcriptional activator (tr)

2.15

88% (H)

1

NM_003442

Prefoldin subunit 6 (KE2 protein) (tl)

2.65

85% (M)

1

M65255

EH domain-binding protein, Epsin (s)

2.23

93% (H)

2

NM_013333

Beta-catenin (s)

2.18

100% (S)

1

AB046171

Casein kinase 2, alpha 1 polypeptide (s)

6.47

87% (H)

1

NM_001895

Small muscle protein (smpx) (s)

7.34

88% (H)

1

BC005948

Tyrosine kinase 9-like (A6-related protein) (s)

2.04

90% (H)

1

BC016452

Fructose-1,6-biphosphatase (m)

25.07

92% (O)

1

AJ272520

Testis intracellular mediator protein (PEAS) (u)

2.12

88% (H)

1

BC021546

Hypothetical protein (FLJ12666) (u)

2.23

93% (H)

1

NM_024595

Unknown small protein (u)

3.93

94% (H)

1

BC005398

Unknown clone (kc2725), homologous to 3' untranslated region (UTR) of *RNA binding protein S1 (u)

2.57

*90% (H)

1

*XM_028847

Unknown clone, homologous to 3' UTR of *enhancer of rudimentary (u)

2.07

*81% (H)

1

*U66871

Unknown clone, homologous to Homo sapiens clone *KIAA0513 (u)

13.21

*81% (H)

1

*NM_014732

Unknown clones (kc2668, kc522, kc2469) (u)

3

 

3

 
  1. Possible involvement: (tr), transcriptional; (tl), translational; (s), signalling; (m) etabolic; (u) unknown. Accession # refers to porcine gene or close homologue: (S) = sus scrofa, R) = rattus norvegicus, (B) = bos taurus, (H) = homo sapiens, (T) = tragelaphus buxtoni, (P) physeter catodon, (M) = mus musculus, (O) = oryctolagus cuniculus, (C) = canis domesticus, (A) = ovis aries.