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Table 1 Genes more highly expressed in psoas than in LD

From: Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles

Gene Psoas/LD Homology # of clones Accession #
Mitochondrial origin     
16S ribosomal RNA 2.07 97% (S) 12 AY011178
12S ribosomal RNA 2.18 100% (S) 7 AY012145
28S ribosomal RNA 2.67 99% (R) 1 V01270
Ribosomal protein S29 4.14 94% (B) 1 U66372
Ribosomal protein L23 30.05 92% (H) 1 NM_000978
Cytochrome oxidase subunit I 2.03 86% (B) 2 AF490529
Cytochrome oxidase subunit III 2.28 81% (T) 1 AF030272
Cytochrome oxidase subunit VIc 27.97 88% (H) 1 NM_004374
Cytochrome oxidase subunit VIb 2.51 96% (B) 1 X15112
NADH dehydrogenase subunit 2 2.51 77% (P) 1 AF414121
NADH dehydrogenase subunit 3 2.58 82% (B) 7 AY052631
NADH dehydrogenase subunit 6 2.15 81% (B) 4 AF416451
NADH dehydrogenase subunit B15 2.34 87% (B) 1 X64898
ATP synthase protein 6 2.1 96% (S) 2 AF190813
ATP synthase protein 8 2.17 100% (S) 1 AF039170
ATP synthase protein 9 20.55 96% (H) 1 NM_001689
tRNA 3.87 97% (S) 2 AF304202
Adenine nucleotide translocator SLC25A6 2.05 92% (H) 1 XM_114724
Sarcomeric / structural     
Ankyrin 1 2.23 93% (H) 1 XM_016774
Tubulin alpha 1 2.68 94% (H) 1 AF141347
Non-sarcomeric     
Pituitary tumor-transforming 1 interacting protein (tr) 2.98 84% (H) 1 BC031097
Par-6 partitioning defective 6 homolog gamma (tr) 30.36 92% (M) 1 XM_129044
TAFII140, a novel TAF component (TATA-binding protein associated factors) (tr) 2.16 94% (H) 1 AJ292190
STAF transcriptional activator (tr) 2.15 88% (H) 1 NM_003442
Prefoldin subunit 6 (KE2 protein) (tl) 2.65 85% (M) 1 M65255
EH domain-binding protein, Epsin (s) 2.23 93% (H) 2 NM_013333
Beta-catenin (s) 2.18 100% (S) 1 AB046171
Casein kinase 2, alpha 1 polypeptide (s) 6.47 87% (H) 1 NM_001895
Small muscle protein (smpx) (s) 7.34 88% (H) 1 BC005948
Tyrosine kinase 9-like (A6-related protein) (s) 2.04 90% (H) 1 BC016452
Fructose-1,6-biphosphatase (m) 25.07 92% (O) 1 AJ272520
Testis intracellular mediator protein (PEAS) (u) 2.12 88% (H) 1 BC021546
Hypothetical protein (FLJ12666) (u) 2.23 93% (H) 1 NM_024595
Unknown small protein (u) 3.93 94% (H) 1 BC005398
Unknown clone (kc2725), homologous to 3' untranslated region (UTR) of *RNA binding protein S1 (u) 2.57 *90% (H) 1 *XM_028847
Unknown clone, homologous to 3' UTR of *enhancer of rudimentary (u) 2.07 *81% (H) 1 *U66871
Unknown clone, homologous to Homo sapiens clone *KIAA0513 (u) 13.21 *81% (H) 1 *NM_014732
Unknown clones (kc2668, kc522, kc2469) (u) 3   3  
  1. Possible involvement: (tr), transcriptional; (tl), translational; (s), signalling; (m) etabolic; (u) unknown. Accession # refers to porcine gene or close homologue: (S) = sus scrofa, R) = rattus norvegicus, (B) = bos taurus, (H) = homo sapiens, (T) = tragelaphus buxtoni, (P) physeter catodon, (M) = mus musculus, (O) = oryctolagus cuniculus, (C) = canis domesticus, (A) = ovis aries.