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Table 2 Genes more highly expressed in LD than in psoas

From: Development of a porcine skeletal muscle cDNA microarray: analysis of differential transcript expression in phenotypically distinct muscles

Gene

LD/Psoas

Homology

# of clones

Accession #

Mitochondrial origin

    

Ribosomal protein L35A

2.2

86% (H)

1

AK055653

Ribosomal protein L7a

1.85

90% (H)

1

BC005128

Ribosomal protein S23

1.91

88% (R)

1

X77398

Ribosomal protein S12

1.61

100% (S)

1

X79417

Sarcomeric / structural

    

Myosin heavy chain fast 2a

1.91

100% (S)

6

AB025260

Myosin heavy chain fast 2x

1.77

100% (S)

2

AB025262

Myosin heavy chain fast 2b

1.88

97% (S)

2

AB025261

Myosin regulatory light chain 2

2.95

91% (H)

2

AF363061

Alpha actinin 3

1.47

93% (H)

2

M86407

S-nexilin

1.77

70% (H)

1

AK057954

Fast skeletal troponin C

1.67

94% (O)

1

Y00760

Fast skeletal troponin T (TnT3)

1.7

93% (B)

3

AB085599

Alpha-1 skeletal actin (ACTA1)

1.53

93% (H)

2

BC012597

Alpha-2 smooth muscle actin (ACTA2)

1.62

96% (H)

1

BC017554

Non-sarcomeric

    

Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 (SERCA1) (g)

1.54

98% (S)

3

AY027797

Aldolase A (g)

1.47

87% (H)

1

BC010660

Phosphoglycerate kinase (g)

1.48

88% (H)

1

V00572

Glyceraldehyde-3-phosphate dehydrogenase (g)

1.53

100% (S)

1

X94251

Muscle pyruvate kinase (PKM2) (g)

1.63

91% (H)

1

BC007952

Phosphoglucomutase isoform 2 (PGM) (g)

1.81

94% (O)

1

M97664

Muscle glycogen phosphorylase (g)

1.65

92% (O)

2

X04265

Adenylate kinase isozyme 1 (myokinase) (g)

1.51

87% (S)

1

E03007

Calsequestrin (c)

1.7

83% (C)

2

J03766

Polyubiquitin (tl)

1.51

90% (A)

1

AF038129

Bridging-integrator protein-1 (bin1) (s)

2.17

85% (H)

1

AF001383

Myomegalin-like protein (u)

6.94

94% (H)

1

AB042557

Heat shock cognate protein (HSPA8) (u)

1.77

93% (B)

1

X53827

Unknown clone, homologous to Homo sapiens clone HSPCO40 (u)

2.08

86% (H)

1

BC000810

Unknown clone, homologous to 3' UTR of Homo sapiens *actin bundling protein (u)

1.99

*77% (H)

1

*U09873

  1. Associated or possible role: (g), glycolysis; (c), contraction; (tl), translation; (s), signalling; (u) unknown. Accession # refers to porcine gene or close homologue. Genus abbreviations as in Table 1.