Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

Table 1 Top 50 PWMs for chromosome 20 sorted by cluster score S in descending order. Each column represents rank number, accession number in TRANSFAC, identifier in TRANSFAC, cluster score, and threshold.

Rank	ACCESSION	ID	S	T
1	M00736	E2F1DP1_01	189.3	2.75
2	M00332	WHN_B	176.0	1.90
3	M00652	NRF1_Q6	122.0	0.93
4	M00649	MAZ_Q6	117.2	4.35
5	M00491	MAZR_01	111.4	1.78
6	M00739	E2F4DP2_01	103.8	0.93
7	M00737	E2F1DP2_01	103.6	0.94
8	M00108	NRF2_01	81.4	0.92
9	M00665	SP3_Q3	72.1	2.39
10	M00706	TFIII_Q6	61.4	4.23
11	M00740	E2F1DP1RB_01	58.4	0.90
12	M00324	MINI20_B	58.2	1.61
13	M00032	CETS1P54_01	57.3	3.70
14	M00743	CETS168_Q6	51.1	1.75
15	M00341	GABP_B	48.6	0.88
16	M00055	NMYC_01	41.1	0.90
17	M00329	PAX9_B	39.2	0.73
18	M00243	EGR1_01	37.3	0.87
19	M00072	CP2_01	36.5	1.66
20	M00054	NFKAPPAB_01	35.5	0.85
21	M00056	MYOGNF1_01	35.1	1.34
22	M00694	E4F1_Q6	35.0	0.86
23	M00738	E2F4DP1_01	34.9	0.91
24	M00143	PAX5_01	34.7	0.84
25	M00235	AHRARNT_01	34.6	0.92
26	M00698	HEB_Q6	33.6	0.91
27	M00039	CREB_01	33.6	1.00
28	M00514	ATF4_Q2	33.1	1.71
29	M00650	MTF1_Q4	31.4	0.88
30	M00194	NFKB_Q6	30.8	0.82
31	M00007	ELK1_01	30.0	0.85
32	M00733	SMAD4_Q6	29.7	0.81
33	M00261	OLF1_01	28.8	0.84
34	M00017	ATF_01	26.7	0.98
35	M00053	CREL_01	25.6	0.81
36	M00691	ATF1_Q6	25.5	0.89
37	M00244	NGFIC_01	25.2	0.88
38	M00041	CREBP1CJUN_01	24.9	1.00
39	M00086	IK1_01	24.2	0.90
40	M00287	NFY_01	24.0	1.95
41	M00466	HIF1_Q5	22.7	0.90
42	M00634	GCM_Q2	22.6	0.84
43	M00273	R_01	21.8	0.85
44	M00373	PAX4_01	21.7	2.57
45	M00097	PAX6_01	21.5	1.15
46	M00134	HNF4_01	21.1	0.64
47	M00670	TCF1P_Q6	21.1	0.80
48	M00057	COMP1_01	21.1	0.59
49	M00035	VMAF_01	21.0	1.32
50	M00222	HAND1E47_01	20.3	0.81

ISSN: 1471-2164