Skip to main content

Table 3 CGI-independent PWMs in descending order of r PC.I (=X). The columns are: rank number, accession number, Identifier in TRANSFAC, r PC.I (=X), r IC.P (=Y), cluster score and threshold.

From: Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

Rank ACCESSION ID X Y S T
1 M00491 MAZR_01 0.27 0.15 117.4 1.8
2 M00706 TFIII_Q6 0.24 0.06 52.7 3.5
3 M00324 MINI20_B 0.22 0.1 53.2 0.8
4 M00056 MYOGNF1_01 0.22 0 31.6 1.3
5 M00649 MAZ_Q6 0.21 0.19 114.4 3.7
6 M00665 SP3_Q3 0.2 0.14 67.7 1.7
7 M00032 CETS1P54_01 0.19 0.1 47.7 1.8
8 M00053 CREL_01 0.19 0.04 26.9 0.8
9 M00054 NFKAPPAB_01 0.19 0.06 33.5 0.9
10 M00632 GATA4_Q3 0.19 0.04 25.1 0.6
11 M00373 PAX4_01 0.19 0.05 26.1 0.6
12 M00072 CP2_01 0.19 0.08 32 0.9
13 M00733 SMAD4_Q6 0.18 0.05 26.3 0.8
14 M00134 HNF4_01 0.18 0.06 25.7 0.6
15 M00194 NFKB_Q6 0.18 0.02 28.5 0.8
16 M00445 XVENT1_01 0.17 0.01 19.9 0.7
17 M00057 COMP1_01 0.17 0.05 24.1 0.5
18 M00097 PAX6_01 0.17 0.06 24.1 0.5
19 M00104 CDPCR1_01 0.17 0.03 21.3 0.6
20 M00222 HAND1E47_01 0.17 0.02 20.4 0.8
21 M00626 EFC_Q6 0.17 0.05 22.6 0.6
22 M00745 LEF1_Q6 0.16 -0.02 15.9 0.8
23 M00707 TFIIA_Q6 0.16 0.03 20.2 0.7
24 M00086 IK1_01 0.16 0.06 24.1 0.9
25 M00329 PAX9_B 0.16 0.1 33.7 0.7
26 M00478 CDC5_01 0.15 0.03 19 0.6
27 M00670 TCF1P_Q6 0.15 0.06 22.7 0.8
28 M00257 RREB1_01 0.15 -0.02 15.8 0.8
29 M00007 ELK1_01 0.15 0.08 31 0.8
30 M00698 HEB_Q6 0.15 0.08 28.7 0.9
31 M00052 NFKAPPAB65_01 0.14 -0.05 9.4 0.9
32 M00514 ATF4_Q2 0.14 0.05 21.8 1.7
33 M00191 ER_Q6 0.14 -0.03 11 0.8
34 M00003 VMYB_01 0.14 0.05 18 0.8
35 M00261 OLF1_01 0.14 0.07 24.6 0.8
36 M00490 BACH2_01 0.13 -0.03 9.3 0.7
37 M00001 MYOD_01 0.13 -0.03 10.4 0.9
38 M00634 GCM_Q2 0.12 0.05 19.8 0.8
39 M00035 VMAF_01 0.12 0.06 17.5 0.7
40 M00340 ETS2_B 0.12 -0.08 5 0.8
41 M00005 AP4_01 0.12 0.01 14.1 0.8
42 M00701 SMAD3_Q6 0.11 0.03 11.4 0.8
43 M00531 NERF_Q2 0.1 -0.08 4.8 0.9
44 M00339 ETS1_B 0.1 -0.07 5.7 0.9
45 M00657 PTF1BETA_Q6 0.1 0 7.5 0.9
46 M00254 CAAT_01 0.1 -0.01 6.6 0.9
47 M00118 MYCMAX_01 0.09 -0.02 6.2 0.9
48 M00693 E12_Q6 0.09 -0.01 6.5 0.9
49 M00004 CMYB_01 0.08 0 7.1 0.9
50 M00238 BARBIE_01 0.08 0.02 9.4 0.9
51 M00648 MAF_Q6 0.07 0.01 5.8 0.8
52 M00002 E47_01 0.06 0.02 5.3 0.9
53 M00262 STAF_01 0.05 0 9.2 0.9
54 M00119 MAX_01 0.05 0.03 4.9 1