Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

Murakami, Katsuhiko; Kojima, Toshio; Sakaki, Yoshiyuki

doi:10.1186/1471-2164-5-16

Table 3 CGI-independent PWMs in descending order of r _PC.I(=X). The columns are: rank number, accession number, Identifier in TRANSFAC, r _PC.I(=X), r _IC.P(=Y), cluster score and threshold.

From: Assessment of clusters of transcription factor binding sites in relationship to human promoter, CpG islands and gene expression

Rank	ACCESSION	ID	X	Y	S	T
1	M00491	MAZR_01	0.27	0.15	117.4	1.8
2	M00706	TFIII_Q6	0.24	0.06	52.7	3.5
3	M00324	MINI20_B	0.22	0.1	53.2	0.8
4	M00056	MYOGNF1_01	0.22	0	31.6	1.3
5	M00649	MAZ_Q6	0.21	0.19	114.4	3.7
6	M00665	SP3_Q3	0.2	0.14	67.7	1.7
7	M00032	CETS1P54_01	0.19	0.1	47.7	1.8
8	M00053	CREL_01	0.19	0.04	26.9	0.8
9	M00054	NFKAPPAB_01	0.19	0.06	33.5	0.9
10	M00632	GATA4_Q3	0.19	0.04	25.1	0.6
11	M00373	PAX4_01	0.19	0.05	26.1	0.6
12	M00072	CP2_01	0.19	0.08	32	0.9
13	M00733	SMAD4_Q6	0.18	0.05	26.3	0.8
14	M00134	HNF4_01	0.18	0.06	25.7	0.6
15	M00194	NFKB_Q6	0.18	0.02	28.5	0.8
16	M00445	XVENT1_01	0.17	0.01	19.9	0.7
17	M00057	COMP1_01	0.17	0.05	24.1	0.5
18	M00097	PAX6_01	0.17	0.06	24.1	0.5
19	M00104	CDPCR1_01	0.17	0.03	21.3	0.6
20	M00222	HAND1E47_01	0.17	0.02	20.4	0.8
21	M00626	EFC_Q6	0.17	0.05	22.6	0.6
22	M00745	LEF1_Q6	0.16	-0.02	15.9	0.8
23	M00707	TFIIA_Q6	0.16	0.03	20.2	0.7
24	M00086	IK1_01	0.16	0.06	24.1	0.9
25	M00329	PAX9_B	0.16	0.1	33.7	0.7
26	M00478	CDC5_01	0.15	0.03	19	0.6
27	M00670	TCF1P_Q6	0.15	0.06	22.7	0.8
28	M00257	RREB1_01	0.15	-0.02	15.8	0.8
29	M00007	ELK1_01	0.15	0.08	31	0.8
30	M00698	HEB_Q6	0.15	0.08	28.7	0.9
31	M00052	NFKAPPAB65_01	0.14	-0.05	9.4	0.9
32	M00514	ATF4_Q2	0.14	0.05	21.8	1.7
33	M00191	ER_Q6	0.14	-0.03	11	0.8
34	M00003	VMYB_01	0.14	0.05	18	0.8
35	M00261	OLF1_01	0.14	0.07	24.6	0.8
36	M00490	BACH2_01	0.13	-0.03	9.3	0.7
37	M00001	MYOD_01	0.13	-0.03	10.4	0.9
38	M00634	GCM_Q2	0.12	0.05	19.8	0.8
39	M00035	VMAF_01	0.12	0.06	17.5	0.7
40	M00340	ETS2_B	0.12	-0.08	5	0.8
41	M00005	AP4_01	0.12	0.01	14.1	0.8
42	M00701	SMAD3_Q6	0.11	0.03	11.4	0.8
43	M00531	NERF_Q2	0.1	-0.08	4.8	0.9
44	M00339	ETS1_B	0.1	-0.07	5.7	0.9
45	M00657	PTF1BETA_Q6	0.1	0	7.5	0.9
46	M00254	CAAT_01	0.1	-0.01	6.6	0.9
47	M00118	MYCMAX_01	0.09	-0.02	6.2	0.9
48	M00693	E12_Q6	0.09	-0.01	6.5	0.9
49	M00004	CMYB_01	0.08	0	7.1	0.9
50	M00238	BARBIE_01	0.08	0.02	9.4	0.9
51	M00648	MAF_Q6	0.07	0.01	5.8	0.8
52	M00002	E47_01	0.06	0.02	5.3	0.9
53	M00262	STAF_01	0.05	0	9.2	0.9
54	M00119	MAX_01	0.05	0.03	4.9	1

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