Table 1 Quality metrics for 8 GeneChips using dChip (percentage of array outliers or single outliers) and MAS (percentage of probe sets with significant detection p-values)
Experiment | Array outliers (%) | Single outliers (%) | Detection P < 0.01 (%) | Detection P < 0.05 (%) |
|---|---|---|---|---|
1. IVT, NHTBE | 0.02 | 0.04 | 21 | 31 |
2. IVT, NHTBE | 0.06 | 0.16 | 24 | 34 |
3. IVT, NCI-H292 | 0.05 | 0.04 | 35 | 45 |
4. IVT, NCI-H292 | 0.23 | 0.09 | 36 | 47 |
5. dIVT, NHTBE | 0.02 | 0.06 | 22 | 32 |
6. dIVT, NHTBE | 0.40 | 0.20 | 13 | 20 |
7. dIVT, NCI-H292 | 0.03 | 0.19 | 25 | 34 |
8. dIVT, NCI-H292 | 0.04 | 0.10 | 26 | 36 |