Table 2 Genomotyping results of N. gonorrhoeae strain FA1090 versus N. gonorrhoeae strain FA19.
Gene probes hybridizing to FA1090 but not FA19 | |
|---|---|
Genes known to be associated with divergence: | Lack of hybridization may be due to: |
XNG0049 (pilC 1) | divergence in FA19 pilC sequence |
XNG0211 (hypothetical) | maf-associated divergence |
XNG0212 (hypothetical) | maf-associated divergence |
XNG0213 (hypothetical) | maf-associated divergence |
XNG1848 (hypothetical) | maf-associated divergence |
XNG0458 (hypothetical) | prophage region-associated divergence |
XNG0459 (regulator) | prophage region-associated divergence |
XNG0460 (hypothetical) | prophage region-associated divergence |
XNG0461 (regulator) | prophage region-associated divergence |
XNG0462 (hypothetical) | prophage region-associated divergence |
XNG1006 (hypothetical) | prophage region-associated divergence |
XNG1509 (hypothetical) | prophage region-associated divergence |
Genes associated with strain-specific regions: | Associated strain-specific region: |
XNG0438 (hypothetical) | pilin-AzlC MME |
XNG0741 (hypothetical) | ung-hypo MME |
XNG0528 (hypothetical) | hypo-aspA MME |
XNG0529 (hypothetical) | hypo-aspA MME |
XNG1114 (hypothetical) | uvrA-hypo MME |
XNG1115 (methylase) | uvrA-hypo MME |
XNG1441 (hypothetical) | nadC-xthA MME |
Gene probes hybridizing to FA19 but not FA1090 | |
Genes known to be associated with divergence | Hybridization to non-FA1090 probes may be due to: |
NMB1541 (lbpB) | lbpB is known to be dead in FA1090 (AF072890) |
NMA0036 (hypothetical) | maf-associated divergence |
NMB2109 (hypothetical) | maf-associated divergence |
NMB2110 (hypothetical) | maf-associated divergence |
NMA1360 (hypothetical) | the presence of a sequenced gene fragment in FA19 |
NMB1119 (hypothetical) | prophage region-associated divergence |
NMB1120 (hypothetical) | prophage region-associated divergence |
GCJDS60 (suppressor) | prophage region-associated divergence |
GCJDS61 (regulator) | prophage region-associated divergence |
Genes associated with strain-specific regions: | Associated strain-specific region: |
NMA2121 (hypothetical) | hypo-hypo MME |
59 Gonococcal Genetic Island genes | ung-hypo MME |