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Table 2 Gene Ontology categories shared by the two genes in pairs with a CD below 20 kbp

From: Inter-species differences of co-expression of neighboring genes in eukaryotic genomes

(A) highly correlated pairs
   category description # pairs
h molecular functions GO:0005132 interferon-alpha/beta receptor ligand 2
h   GO:0005194 cell adhesion 2
h   GO:0008089 anterograde axon cargo transport 4
h biological process GO:0006954 inflammatory response 6
h   GO:0006955 immune response 3
h   GO:0007165 signal transduction 5
h cellular component GO:0005634 nucleus 5
h   GO:0005886 plasma membrane 5
h   GO:0005887 integral to plasma membrane 2
y molecular functions GO:0003735 structural cons tituent of ribosome 12 (1)
y biological process GO:0006412 protein biosynthesis 13 (1)
y cellular component GO:0005737 cytoplasm 12 (2)
(B) zero-correlated pairs
h molecular functions GO:0005200 cytoskeletal structural protein 3
h   GO:0008009 chemokine 2
h   GO:0008417 fucosyltransferase 2
h   GO:0015464 acetylcholine receptor 2
h biological process GO:0006954 inflammatory response 3
h   GO:0007048 oncogenesis 4
h   GO:0007165 signal transduction 8
h cellular component GO:0005882 intermediate filament 3
h   GO:0005886 plasma membrane 4
h   GO:0005887 integral to plasma membrane 5
(C) negatively correlated pairs
h molecular functions GO:0005624 membrane fraction 3
h biological process GO:0006508 proteolysis and peptidolysis 2
h   GO:0007165 signal transduction 2
h cellular component GO:0005624 membrane fraction 3
h   GO:0005887 integral to plasma membrane 2
  1. A 'h' and 'y' in the left column denotes that the pairs were from the human (Diette [26]) and yeast (Cho et al. [9]) dataset, respectively. In yeast, none pair shared the same category in the ZC and NC groups. A number in parentheses in the right column indicates the number of duplicated pairs.