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Table 4 Number of genes mapped to retinal disease loci

From: The Retinome – Defining a reference transcriptome of the adult mammalian retina/retinal pigment epithelium

Disease

Chr.

Flanking DNA marker

 

Size of locus (Mb)

No. of SGPs (n = 43,109)

No. of retinome transcripts a) (n = 13,307)

No. of "retinome-enriched" transcripts (n = 5,051)

AA

11

D11S1323

D11S902

11.21

213

65

13

AIED

X

DXS7

DXS72

37.33

479

129

49

AXPC1

1

D1S2692

D1S414

3.00

43

7

3

BBS3

3

D3S1603

D3S1271

2.28

28

10

1

BBS5

2

D2S142

D2S326

16.81

353

50

24

BCD

4

D4S3051

D4S1652

2.06

17

2

1

CACD

17

D17S1810

CHLC.GAT7B03

3.17

118

76

36

COD2

X

DXS292

DXS1113

6.1

37

5

3

COD4

X

DXS10042

DXS8060

32.44

436

117

45

CORD1

18

marker position not available

-

-

-

-

CORD4

17

marker position not available

-

-

-

-

CORD8

1

D1S442

D1S2681

19.86

485

222

74

CORD9

8

D8S1820

D8S532

12.79

179

43

16

CRV

3

D3S3564

D3S1578

11.2

271

157

72

CYMD

7

D7S435

D7S526

1.56

25

13

7

EVR3

11

GATA34E08

D11S4102

14.00

192

35

13

LCA3

14

D14S606

D14S610

5.95

178

36

15

LCA5

6

D6S1551

D6S1694

36.08

541

263

93

LCA9

1

D1S1612

D1S228

5.52

130

51

22

MCDR1

6

D6S249

D6S1671

2.44

45

2

0

MCDR2

4

D4S3023

D4S3022

21.00

253

57

20

MCDR3

5

D5S1981

D5S2031

19.94

184

36

14

MCDR4

14

D14S261

-

10.00 b)

58

11

4

MRST

15

D15S211

D15S152

4.70

106

24

11

OPA2

X

DXS993

DXS991

14.31

245

69

24

OPA4

18

D18S34

D18S548

2.55

23

3

1

PRD

X

MAOB

DXS426

3.92

67

18

6

RCD1

6

marker position not available

-

-

-

-

RNANC

10

D10S1225

D10S1418

5.76

58

9

2

ROA1

8

D8S1702

D8S1794

11.87

150

30

13

RP6

X

DXS28

DXS164

4.92

60

4

2

RP17

17

D17S1607

D17S948

7.18

130

44

17

RP22

16

D16S287

D16S420

6.33

92

40

14

RP23

X

DXS1223

DXS7161

10.51

140

30

15

RP24

X

DXS8094

DXS8043

7.75

74

6

3

RP28

2

D1S1337

D2S286

45.78

674

194

68

RP29

4

D4S3035

D4S2417

3.66

28

5

2

STGD4

4

D4S1582

D4S2397

16.56

187

33

10

USH1A

14

D14S99E

D14S292

6.98

134

44

18

USH1E

21

D21S1905

D21S1913

11.48

77

19

10

USH2B

3

D3S1578

D3S3658

12.80

287

161

74

USH2C

5

D5S428

D5S433

18.54

269

34

13

VRNI

11

INT2

D11S873

22.41

311

89

37

WFS2

4

D4S2366

D4S3023

2.18

26

10

5

WGN1

5

D5S626

D5S2103

7.11

84

9

4

  1. a) See additional File 14; b) Linkage to a single DNA marker reported. An arbitrary locus size of 10.0 Mb was assigned.
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