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Table 1 CTLD-encoding genes identified in the Fugu rubripes genome.a

From: C-type lectin-like domains in Fugu rubripes

Name Description v.2 gene ID v.3 gene ID
I Hyalectans
AGGRECAN AGGRECAN ANUFRUG00000000095 ANUFR2G00000000089
AGGRECAN-F1 Fugu aggrecan paralogue ANUFRUG00000000081 ANUFR2G00000000077
BREVICAN BREVICAN SINFRUG00000078610 SINFRUG00000151617
BREVICAN-F1 Fugu brevican paralogue SINFRUG00000074933 SINFRUG00000128229,
SINFRUG00000128230,
SINFRUG00000128231
NEUROCAN NEUROCAN SINFRUG00000054833 SINFRUG00000150572,
SINFRUG00000150573,
SINFRUG00000150574,
SINFRUG00000150576
NEUROCAN-F1 Fugu Neurocan paralogue ANUFRUG00000000142 ANUFR2G00000000154
VERSICAN VERSICAN ANUFRUG00000000144 ANUFR2G00000000164
VERSICAN-F1 Fugu versican paralogue (fragment containing EGF, CTLD and CCP domains) ANUFRUG00000000061 ANUFR2G00000000059
VERSICAN-F2 Fugu versican paralogue (fragment containing link and Ig domains) ANUFRUG00000000043 ANUFR2G00000000041
II Dendritic cell receptors, mono-ctld macrophage receptors, ASGR
DC-SIGN-F1 Fugu DC-SIGN paralogue ANUFRUG00000000029 ANUFR2G00000000027
DC-SIGN-F2 Fugu DC-SIGN paralogue ANUFRUG00000000067 ANUFR2G00000000063
DC-SIGN-F3 Fugu DC-SIGN paralogue ANUFRUG00000000069 ANUFR2G00000000065
DC-SIGN-F4 Fugu DC-SIGN paralogue ANUFRUG00000000071 ANUFR2G00000000067
DC-SIGN-F5 Fugu DC-SIGN paralogue ANUFRUG00000000073 ANUFR2G00000000069
DC-SIGN-F6 Fugu DC-SIGN paralogue ANUFRUG00000000109 ANUFR2G00000000105
DC-SIGN-F7 Fugu DC-SIGN paralogue ANUFRUG00000000085 ANUFR2G00000000123
DC-SIGN-F8 Fugu DC-SIGN paralogue ANUFRUG00000000087 ANUFR2G00000000081
DC-SIGNR DCSIGN receptor ANUFRUG00000000027 ANUFR2G00000000025
HML2 Similar to human macrophage lectin SINFRUG00000060881 SINFRUG00000120587
SRCL Scavenger receptor with C-type lectin SINFRUG00000071148 SINFRUG00000134389
SRCL-F1 Putative Fugu paralogue of SRCL SINFRUG00000064389 SINFRUG00000152316
XLCMCL eXtra Large Coiled coil region containing Membrane C-type Lectin ANUFRUG00000000053 ANUFR2G00000000051
III Collectins    
COLEC10 COLEC10 SINFRUG00000077039 SINFRUG00000125405
MGC3279 Uncharacterized collectin family member SINFRUG00000064196 SINFRUG00000147955
IV Selectins
SELECTIN-E E-Selectin ANUFRUG00000000001 ANUFR2G00000000001
SELECTIN-L L-SELECTIN ANUFRUG00000000003 ANUFR2G00000000003
SELECTIN-P P-SELECTIN ANUFRUG00000000005 ANUFR2G00000000005
VI Multi-CTLD molecules. Macrophage Mannose Receptor (MMR) family
DEC205 DEC205 ANUFRUG00000000011 ANUFR2G00000000011
Endo180 Endo180 SINFRUG00000058766 SINFRUG00000152106
MManR Macrophage mannose receptor SINFRUG00000071196 SINFRUG00000126868,
SINFRUG00000134363
MManR-F1 Fugu mannose receptor paralogue (fragment) SINFRUG00000064600 SINFRUG00000152797
MManR-F2 Fugu macrophage mannose receptor paralogue. ANUFRUG00000000039 ANUFR2G00000000035
ANUFR2G00000000037
MManR-F3 Fugu paralogue of MMR-family gene SINFRUG00000066378 SINFRUG00000152288
MManR-F4 Fugu paralogue of MMR-family gene (fragment) SINFRUG00000078047 SINFRUG00000152861
MManR-F5 Fugu MMR-family member (fragment) ANUFRUG00000000091 ANUFR2G00000000085
PLA2R Phosopholipase A2 receptor ANUFRUG00000000009 ANUFR2G00000000009
VIII MT-75, layilin
LAYILIN Layilin ANUFRUG00000000089 ANUFR2G00000000083
LAYILIN-F1 Fugu layilin paralogue ANUFRUG00000000075 ANUFR2G00000000071
MT-75 MT-75 SINFRUG00000084745 SINFRUG00000145404
IX Tetranectin family
CLECSF1 CLECSF1 SINFRUG00000050048 SINFRUG00000136890
SCGF SCGF ANUFRUG00000000125 ANUFR2G00000000121
TETRANECTIN Tetranectin SINFRUG00000084961 SINFRUG00000144710
TETRANECTIN-F1 Fugu tetranectin paralogue SINFRUG00000083037 SINFRUG00000149544
X PKD
PKD1 Polycystic kidney disease protein 1 SINFRUG00000033997  
PKD1L2 PKD-1 homologue 2 ANUFRUG00000000121 ANUFR2G00000000117
XI Attractin family
ATTRACTIN Attractin SINFRUG00000071911 SINFRUG00000136030
ATTRACTIN-F1 Fugu paralogue of Attractin SINFRUG00000060472 SINFRUG00000147061
KIAA0534 KIAA0534 SINFRUG00000056251 SINFRUG00000121439
XII Eosinophil major basic protein family
EMBPL Putative Fugu EMBP-like protein ANUFRUG00000000023 ANUFR2G00000000021
XIII DGCR family
DGCR2 DGCR2 SINFRUG00000082125 SINFRUG00000155593
XIV Thrombomodulin family
C1qRP C1qRP ANUFRUG00000000049 ANUFR2G00000000047
C1qRP-F1 Putative Fugu C1qRP paralogue (fragment) ANUFRUG00000000013 disappeared
CETM Protein containing CTLD, EGF and transmembrane domains ANUFRUG00000000057 ANUFR2G00000000055
ENDOSIALIN ENDOSIALIN ANUFRUG00000000117 ANUFR2G00000000113
THROMBOMOD Thrombomodulin SINFRUG00000077807 SINFRUG00000153798
XV Bimlec
BIMLEC Novel C-type lectin from BCG cell wall induced monocyte ANUFRUG00000000007 ANUFR2G00000000007
XVI SEEC
SEEC Novel SCP-EGF-EFG-CTLD containing protein. ANUFRUG00000000041 ANUFR2G00000000039
XVII CBCP
CBCP Calx-Beta and CTLD containing protein ANUFRUG00000000047 ANUFR2G00000000045
AFP Antifreeze protein
AFPL-F1 Antifreeze protein-like ANUFRUG00000000045 ANUFR2G00000000043
AFPL-F2 Antifreeze protein-like ANUFRUG00000000139 disappeared
F1 Fugu dual-CTLD molecules
FDC-F1 Putative Fugu dual-CTLD protein 1 ANUFRUG00000000025 ANUFR2G00000000023
FDC-F2 Putative Fugu dual-CTLD protein 2 ANUFRUG00000000037 ANUFR2G00000000033
FDC-F3 Putative Fugu dual-CTLD protein 3 ANUFRUG00000000099 ANUFR2G00000000093
FDC-F4 Putative Fugu dual-CTLD protein 4 ANUFRUG00000000103 ANUFR2G00000000097,
ANUFR2G00000000099
FDC-F5 Putative Fugu dual-CTLD protein 5 ANUFRUG00000000107 ANUFR2G00000000103
FDC-F6 Putative Fugu dual-CTLD protein 6 ANUFRUG00000000123 ANUFR2G00000000119
FDC-F7 Putative Fugu dual-CTLD protein 7 ANUFRUG00000000101 ANUFR2G00000000095
FTCP Putative Fugu triple-CTLD protein ANUFRUG00000000015 ANUFR2G00000000013
L Link domain
BRAL1 Brain link protein-1 SINFRUG00000078615 SINFRUG00000151615
CD44 CD44 ANUFRUG00000000113 ANUFR2G00000000109
CRTL1 Cartilage linking protein 1 SINFRUG00000078961 SINFRUG00000137046
CRTL1-F1 Putative fugu cartilage linking protein paralogue ANUFRUG00000000059 ANUFR2G00000000057
CRTL1-F2 Putative fugu cartilage linking protein paralogue SINFRUG00000074643 SINFRUG00000142167,
SINFRUG00000142169,
SINFRUG00000142171
HAPLN3 Hyaluronan and proteoglycan link protein 3 SINFRUG00000052853 SINFRUG00000155413
HAPLN3-F1 Putative Fugu paralogue of HAPLN3 SINFRUG00000079552 SINFRUG00000129575
Lyve-1 Lymphatic vessel endothelial HA receptor-1 ANUFRUG00000000077 ANUFR2G00000000073
STABILIN-1 Stabilin-1 ANUFRUG00000000079 ANUFR2G00000000075
STABILIN-2 Stabilin-2 SINFRUG00000074867 SINFRUG00000146665
TSG-6 TSG-6 SINFRUG00000075173 SINFRUG00000148136
NLSLH
NLSLH Novel L-SeLectin Homologue ANUFRUG00000000055 ANUFR2G00000000053
NLSLH-F1 Fugu CTLD containing gene fragment, NLSLH paralogue ANUFRUG00000000097 ANUFR2G00000000091
U Unclassified
AGGRECOL Putative Fugu CTLD-containing protein equally similar to aggrecan and placenta collectin. ANUFRUG00000000083 ANUFR2G00000000079
ANZG001 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000019 ANUFR2G00000000017
ANZG002 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000021 ANUFR2G00000000019
ANZG004 Putative Fugu protein with CTLD and FTP domains ANUFRUG00000000093 ANUFR2G00000000087
ANZG005 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000065 disappeared
ANZG006 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000111 ANUFR2G00000000107
ANZG007 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000063 ANUFR2G00000000061
ANZG008 Putative Fugu CTLD-containing protein (fragment) ANUFRUG00000000017 ANUFR2G00000000015
ANZG010 Putative Fugu CTLD-containing protein ANUFRUG00000000051 ANUFR2G00000000049
ANZG011 Putative Fugu CTLD-containing protein ANUFRUG00000000115 ANUFR2G00000000111
CFN3 Protein with CTLD and FN3 domains. ANUFRUG00000000105 ANUFR2G00000000101
DEC205-FUSE Large Fugu protein which looks like a DEC205 fused to another CTLD-containing gene ANUFRUG00000000119 ANUFR2G00000000115
FG75645 Fugu CTLD-containing protein fragment SINFRUG00000075645 SINFRUG00000139863
PTP-GMC1 Protein-tyrosine phosphatase expressed by glomerular mesangial cells ANUFRUG00000000130 ANUFR2G00000000137
  1. a All Fugu CTLDcps identified in this analysis are listed. Columns 3 and 4 contain stable identifiers for gene models in the v.2 and v.3 assembly databases, respectively. Identifiers starting with ANUFRU and ANUFR2 belong to our predictions on the v.2 and v.3 assemblies, respectively, and are underlined. EnsEMBL gene stable identifiers are given if the original predictions were used. Bolded members denote Fugu proteins matched with novel human orthologues.