Skip to main content

Table 6 Ambystoma contigs that show sequence similarity to rat spinal cord injury genes.

From: From biomedicine to natural history research: EST resources for ambystomatid salamanders

Ambystoma Contig ID RAT cDNA clone E-value
MexCluster_7440_Contig1 gi|1150557|c-myc, exon 2 E-29
MexCluster_4624_Contig1 gi|1468968| brain acyl-CoA synthtase II E-09
TigCluster_4083_Contig1   E-09
TigSingletonClusters_Salamander_4_G20_ab1 gi|1552375| SKR6 gene, a CB1 cannabinoid recept. E-08
MexSingletonClusters_NT009B_B04 gi|17352488| cyclin ania-6a E-46
TigCluster_3719_Contig1   E-114
TigCluster_8423_Contig1 gi|1778068| binding zyginI E-102
TigCluster_7064_Contig1 gi|1836160| Ca2+/calmodulin-dependent E-20
MexCluster_3225_Contig1 gi|1906612| Rattus norvegicus CXC chemokine E-68
TigSingletonClusters_Salamander_13_F03_ab1   E-38
MexSingletonClusters_BL285B_A06 gi|203042| (Na+, K+)-ATPase-beta-2 subunit E-63
TigCluster_6994_Contig1   E-65
MexSingletonClusters_BL014B_F12 gi|203048| plasma membrane Ca2+ ATPase-isoform 2 E-112
TigSingletonClusters_Salamander_5_F07_ab1   E-92
MexCluster_1251_Contig1 gi|203167| GTP-binding protein (G-alpha-i1) E-110
TigSingletonClusters_Salamander_3_P14_ab1   E-152
TigSingletonClusters_Salamander_22_B01_ab1 gi|203336| catechol-O-methyltransferase E-47
TigSingletonClusters_Salamander_17_N04_ab1 gi|203467| voltage-gated K+ channel protein (RK5) E-08
MexSingletonClusters_v1_p8_c16_triplex5ld_ gi|203583| cytosolic retinol-binding protein (CRBP) E-77
TigCluster_6321_Contig1   E-18
MexCluster_5399_Contig1 gi|204647| heme oxygenase gene E-67
TigCluster_2577_Contig1   E-67
MexCluster_4647_Contig1 gi|204664| heat shock protein 27 (Hsp27) E-83
TigSingletonClusters_Salamander_12_M05_ab1   E-51
MexSingletonClusters_BL285C_F02 gi|205404| metabotropic glutamate receptor 3 E-41
TigSingletonClusters_Salamander_2_B24_ab1 gi|205508| myelin/oligodendrocyte glycoprotein E-26
TigCluster_5740_V2_p10_M20_TriplEx5ld_ gi|205531| metallothionein-2 and metallothionein 1 E-08
TigSingletonClusters_V2_p5_A2_TriplEx5ld_ gi|205537| microtubule-associated protein 1A E-59
MexCluster_1645_Contig1 gi|205633| Na, K-ATPase alpha-2 subunit E-149
TigSingletonClusters_Contig328   0
TigSingletonClusters_Contig45 gi|205683| smallest neurofilament protein (NF-L) E-63
MexSingletonClusters_NT016A_A09 gi|205693| nerve growth factor-induced (NGFI-A) E-95
TigSingletonClusters_I09_Ag2_p9_K24_M13R   E-24
MexSingletonClusters_NT007A_E07 gi|205754| neuronal protein (NP25) E-64
TigCluster_7148_Contig1   E-57
MexCluster_9504_Contig1 gi|206161| peripheral-type benzodiazepine receptor E-73
MexSingletonClusters_BL016B_B02 gi|206166| protein kinase C type III E-36
TigCluster_981_Contig1   E-27
MexSingletonClusters_nm_19_k3_t3_ gi|206170| brain type II Ca2+/calmodulin-dependent E-117
MexSingletonClusters_v11_p42_j20_t3_049_ab1 gi|207138| norvegicus syntaxin B   1e-079
MexSingletonClusters_nm_14_h19_t3_ gi|207473| neural receptor protein-tyrosine kinase E-40
TigSingletonClusters_Contig336   E-34
TigSingletonClusters_E10_Ag2_p18_O19_M13 gi|2116627| SNAP-25A E-123
MexCluster_211_Contig1 gi|220713| calcineurin A alpha E-63
TigSingletonClusters_Salamander_7_K14_ab1   E-87
MexSingletonClusters_NT014A_G03 gi|220839| platelet-derived growth factor A chain E-21
TigSingletonClusters_Salamander_9_M15_ab1   E-56
TigSingletonClusters_Salamander_19_M06_ab1 gi|2501807| brain digoxin carrier protein E-55
MexSingletonClusters_Contig100 gi|2746069| MAP-kinase phosphatase (cpg21) E-108
TigSingletonClusters_Salamander_11_A16_ab1   E-70
MexCluster_8345_Contig1 gi|2832312| survival motor neuron (smn) E-40
TigCluster_8032_Contig1   E-49
MexCluster_3580_Contig1 gi|294567| heat shock protein 70 (HSP70) 0
TigCluster_8592_Contig2   E-161
TigSingletonClusters_Salamander_17_N08_ab1 gi|2961528| carboxyl-terminal PDZ E-10
MexSingletonClusters_BL286C_D09 gi|298325| sodium-dependent neurotransmitter tran. E-12
TigSingletonClusters_Contig95   E-22
MexSingletonClusters_Contig461 gi|2996031| brain finger protein (BFP) E-08
TigSingletonClusters_Salamander_11_O19_ab1   E-23
TigSingletonClusters_E16_Ag2_p8_O20_M13R gi|3135196| Ca2+/calmodulin-dependent E-33
MexSingletonClusters_Contig188 gi|3252500| CC chemokine receptor protein E-15
MexCluster_6961_Contig1 gi|3319323| suppressor of cytokine signaling-3 E-08
MexSingletonClusters_nm_14_p15_t3_ gi|349552| P-selectin E-16
TigCluster_218_Contig2   E-99
MexSingletonClusters_Contig506 gi|3707306| Normalized rat embryo, cDNA clone E-14
TigSingletonClusters_I16_Ag2_p5_N7_M13R gi|3711670| Normalized rat muscle, cDNA clone E-35
MexSingletonClusters_V1_p1_a10_Triplex5Ld gi|3727094| Normalized rat ovary, cDNA clone E-15
TigSingletonClusters_v2_p1_D20_triplex5ld   E-16
MexSingletonClusters_NT005B_F02 gi|3811504| Normalized rat brain, cDNA clone E-35
TigSingletonClusters_Salamander_22_I04_ab1   E-34
TigSingletonClusters_Ag2_p34_N23_M13R gi|405556| adenylyl cyclase-activated serotonin E-17
TigSingletonClusters_Salamander_1_H02_ab1 gi|4103371| putative potassium channel TWIK E-22
MexCluster_4589_Contig1 gi|4135567| Normalized rat embryo, cDNA clone E-32
TigSingletonClusters_Contig220   E-09
TigCluster_4093_Contig1 gi|4228395| cDNA clone UI-R-A0-bc-h-02-0-UI E-104
MexSingletonClusters_nm_21_2_m7_t3_ gi|425471| nuclear factor kappa B p105 subunit E-22
TigCluster_8535_Contig1   E-11
MexSingletonClusters_v6_p1_j6_triplex5_1ld_ gi|430718| Sprague Dawley inducible nitric oxide E-13
TigSingletonClusters_Salamander_15_D22_ab1   E-41
MexCluster_3498_Contig1 gi|436934| Sprague Dawley protein kinase C rec. 0
TigCluster_6648_Contig1   0
MexSingletonClusters_BL279A_B12 gi|464196| phosphodiesterase I E-49
TigSingletonClusters_Salamander_25_P03_ab1   E-75
MexCluster_8708_Contig1 gi|466438| 40kDa ribosomal protein E-168
TigCluster_5877_Contig1   E-168
MexSingletonClusters_nm_14_a9_t3_ gi|493208| stress activated protein kinase alpha II E-51
TigSingletonClusters_Salamander_11_A13_ab1 gi|517393| tau microtubule-associated protein E-44
TigSingletonClusters_Salamander_12_J14_ab1 gi|55933| c-fos E-26
MexSingletonClusters_nm_21_2_l13_t3_ gi|56822| major synaptic vesicel protein p38 E-39
TigCluster_2065_Contig1   E-50
MexCluster_10965_Contig1 gi|56828| nuclear oncoprotein p53 E-75
TigCluster_5315_Contig1   E-66
MexCluster_4245_Contig1 gi|56909| pJunB gene E-50
TigSingletonClusters_G05_Ag2_p9_G8_M13R   E-09
MexSingletonClusters_NT013D_C12 gi|56919| region fragment for protein kinase C E-33
TigSingletonClusters_Salamander_21_H19_ab1   E-24
MexCluster_9585_Contig1 gi|57007| ras-related mRNA rab3 E-61
TigCluster_4885_Contig1   E-63
TigSingletonClusters_Salamander_1_M03_ab1 gi|57238| silencer factor B E-13
MexSingletonClusters_NT008B_D05 gi|57341| transforming growth factor-beta 1 E-13
TigSingletonClusters_Salamander_24_I16_ab1   E-20
MexCluster_9533_Contig1 gi|57479| vimentin 0
TigCluster_5768_Contig1   0
MexSingletonClusters_BL283B_A11 gi|596053| immediate early gene transcription E-12
TigSingletonClusters_Salamander_13_J19_ab1   E-16
MexSingletonClusters_v6_p4_j2_triplex5_1ld_ gi|790632| macrophage inflammatory protein-1alpha E-22
TigCluster_2146_Contig1 gi|951175| limbic system-associated membrane prot. E-11
MexSingletonClusters_v11_p54_o4_t3_ gi|971274| neurodegeneration associated protein 1 E-09
TigSingletonClusters_Salamander_2_J12_ab1   E-11