Table 1
From: Selection and validation of endogenous reference genes using a high throughput approach
384 experiments | 7 replicates | ||||||
|---|---|---|---|---|---|---|---|
Gene Name | Image ID | Unique ID | Mean Intensity | Mean of logRatio | SD of logRatio | Mean of logRatio | SD of logRatio |
cDNA FLJ40458 | 1571492 | Hs.181346 | 2835 | 0.19 | 0.27 | 0.39 | 0.15 |
Unknown | 301067 | 2571 | 0.1 | 0.27 | 0 | 0.21 | |
PTH | 322051 | Hs.37045 | 3380 | 0 | 0.28 | -0.02 | 0.27 |
KIAA1935 | 39938 | Hs.300776 | 2359 | 0.16 | 0.28 | 0.01 | 0.19 |
ESTs | 49313 | Hs.395460 | 2079 | 0.15 | 0.28 | 0.08 | 0.03 |
cDNA FLJ30539 fis | 49463 | Hs.21489 | 2561 | 0.09 | 0.28 | 0.17 | 0.13 |
SDCCAG16 | 1576228 | Hs.271926 | 2111 | 0.11 | 0.29 | 0.28 | 0.14 |
clone IMAGE:41799 | 278673 | Hs.271721 | 3132 | 0.16 | 0.3 | -0.04 | 0.1 |
PSIP2 | 289945 | Hs.82110 | 2521 | -0.07 | 0.3 | -0.06 | 0.19 |
ETV2 | 1468722 | Hs.194061 | 2646 | 0.09 | 0.31 | 0 | 0.28 |
ESTs | 1571401 | Hs.126999 | 2659 | 0.05 | 0.31 | -0.04 | 0.08 |
NEDD8 | 277660 | Hs.75512 | 3875 | 0.08 | 0.31 | 0.1 | 0.2 |
HIP2 | 486259 | Hs.155485 | 2511 | 0.11 | 0.31 | 0.12 | 0.25 |
HIRIP5 | 745314 | Hs.430439 | 3407 | -0.08 | 0.31 | 0.07 | 0.31 |
ACTR8 | 156363 | Hs.124219 | 2731 | 0.08 | 0.32 | 0.14 | 0.16 |
GPLD1 | 293696 | Hs.272529 | 3110 | -0.03 | 0.32 | -0.05 | 0.28 |
KIAA0769 | 299128 | Hs.19056 | 2148 | 0.14 | 0.32 | 0.05 | 0.2 |
CSNK1G2 | 346031 | Hs.181390 | 2320 | -0.03 | 0.32 | -0.24 | 0.28 |
RAB31 | 784150 | Hs.223025 | 3479 | -0.06 | 0.32 | -0.36 | 0.36 |
C14orf117 | 796100 | Hs.103189 | 2008 | 0.12 | 0.32 | -0.01 | 0.16 |
ATP6IP2 | 825077 | Hs.183434 | 2159 | 0.02 | 0.32 | 0.28 | 0.32 |
SNRPD3 | 897099 | Hs.1575 | 3031 | -0.04 | 0.32 | -0.48 | 0.25 |
Unknown | 1292073 | 2745 | -0.13 | 0.33 | 0.05 | 0.28 | |
ESTs | 22137 | Hs.187406 | 3133 | 0.07 | 0.33 | -0.01 | 0.21 |
ESTs | 32782 | Hs.443140 | 2464 | -0.02 | 0.33 | 0.09 | 0.26 |
L3MBTL | 43090 | Hs.300863 | 2581 | -0.08 | 0.33 | -0.41 | 0.31 |
GNRH1 | 487071 | Hs.82963 | 3294 | 0.05 | 0.33 | 0.23 | 0.23 |
clone 24629 mRNA | 746258 | Hs.142570 | 2645 | 0.05 | 0.33 | -0.21 | 0.14 |
FLJ12998 | 826367 | Hs.343627 | 2267 | 0.14 | 0.33 | 0.03 | 0.3 |
cDNA: FLJ23477 fis | 1492329 | Hs.145362 | 2142 | 0.09 | 0.34 | 0.35 | 0.34 |
HOXC4 | 1756945 | Hs.50895 | 2581 | 0.03 | 0.34 | -0.02 | 0.22 |
WSX1 | 1855887 | Hs.132781 | 3259 | -0.01 | 0.34 | 0.12 | 0.3 |
HIST1H1A | 1872543 | Hs.150206 | 2523 | 0.07 | 0.34 | -0.17 | 0.14 |
TFAP2B | 363144 | Hs.33102 | 2510 | 0.05 | 0.34 | 0.67 | 0.35 |
TRIM31 | 509760 | Hs.91096 | 2753 | 0.06 | 0.34 | -0.08 | 0.2 |
FLJ00166 | 713191 | Hs.43213 | 3134 | 0.08 | 0.34 | 0 | 0.22 |
CDK5R1 | 757873 | Hs.93597 | 2965 | -0.12 | 0.34 | -0.22 | 0.15 |
PPP3CA | 796730 | Hs.272458 | 2605 | -0.07 | 0.34 | -0.36 | 0.16 |
PMS2L4 | 161373 | Hs.278468 | 2534 | -0.14 | 0.35 | -0.21 | 0.22 |
DLGAP1 | 1758491 | Hs.75814 | 2143 | 0.02 | 0.35 | -0.24 | 0.2 |
ESTs | 177884 | Hs.14613 | 2054 | 0.01 | 0.35 | -0.22 | 0.25 |
NRL | 2364249 | Hs.89606 | 2300 | -0.04 | 0.35 | -0.09 | 0.14 |
RAB36 | 281489 | Hs.38772 | 3143 | -0.08 | 0.35 | 0 | 0.12 |
RPC8 | 323603 | Hs.353192 | 2367 | -0.06 | 0.35 | -0.33 | 0.24 |
ZNF177 | 33294 | Hs.172979 | 2988 | 0.01 | 0.35 | -0.21 | 0.25 |
LY6G5C | 448136 | Hs.246845 | 3591 | -0.02 | 0.35 | -0.44 | 0.28 |
RAD17 | 586844 | Hs.16184 | 3797 | -0.01 | 0.35 | 0.12 | 0.15 |
LOC253039 | 1033388 | Hs.41181 | 3612 | -0.02 | 0.36 | 0.31 | 0.08 |
IMPDH2 | 1582050 | Hs.75432 | 2709 | -0.01 | 0.36 | -0.08 | 0.18 |
PRMT3 | 2074202 | Hs.152337 | 2042 | 0.07 | 0.36 | -0.06 | 0.21 |
FZD6 | 214916 | Hs.114218 | 3884 | 0.03 | 0.36 | 0.02 | 0.26 |
AP3B2 | 47510 | Hs.21022 | 2350 | 0.03 | 0.36 | -0.23 | 0.31 |
NF2 | 769716 | Hs.902 | 2887 | -0.08 | 0.36 | -0.11 | 0.31 |
SCP2 | 855395 | Hs.75760 | 3218 | -0.12 | 0.36 | -0.1 | 0.19 |
COL8A1 | 1472775 | Hs.114599 | 4178 | -0.06 | 0.37 | 0.05 | 0.18 |
AKAP4 | 1643144 | Hs.97633 | 2557 | -0.03 | 0.37 | -0.07 | 0.15 |
Unknown | 1671546 | 3386 | 0.03 | 0.37 | 1 | 0.42 | |
TCF8 | 178463 | Hs.232068 | 2726 | -0.04 | 0.37 | -0.01 | 0.06 |
TNP2 | 1839038 | Hs.2748 | 2737 | 0.08 | 0.37 | 0.11 | 0.24 |
PIWIL1 | 2329739 | Hs.194712 | 2573 | -0.08 | 0.37 | -0.14 | 0.22 |
DBCCR1 | 47037 | Hs.6090 | 2481 | -0.01 | 0.37 | -0.18 | 0.24 |
SLC21A3 | 289706 | Hs.46440 | 2708 | 0 | 0.38 | -0.11 | 0.27 |
ESTs | 35105 | Hs.403854 | 3126 | 0.03 | 0.38 | 0.23 | 0.18 |
cDNA FLJ34400 fis | 511835 | Hs.380035 | 3058 | 0 | 0.38 | 0.02 | 0.37 |
CNTN1 | 51640 | Hs.143434 | 2479 | -0.05 | 0.38 | -0.11 | 0.3 |
TFCP2 | 843067 | Hs.154970 | 3728 | -0.06 | 0.38 | 0.16 | 0.34 |
C17orf35 | 510032 | Hs.15196 | 2778 | -0.02 | 0.39 | 0.09 | 0.28 |
AFAP | 488062 | Hs.80306 | 3142 | 0 | 0.42 | 0.12 | 0.15 |
MTP | 731054 | Hs.195799 | 2764 | -0.01 | 0.42 | -0.09 | 0.4 |