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Table 1 Potential a 1-α 2 Binding Sites in Haploid-specific Genes

From: Combined analysis of expression data and transcription factor binding sites in the yeast genome

ORF

Gene

Expression p-vala

Binding p-valb

Combined p-val

a1-α 2 ChIPc

YDL227C

HO

0.0006

0.0017

1.1e-6

+f

YLR265C

NEJ1

0.0003

0.0053

1.7e-6

+

YBL016W

FUS3

0.0001

0.0991

1.6e-5+

 

YOR212W

STE4

0.0020

0.0082

1.7e-5

+

YJR086W

STE18

0.0008

0.0218

1.7e-5

+

YHR005C

GPA1

0.0005

0.0437

2.1e-5

+

YDR103W

STE5

0.0017

0.0298

5.2e-5

+

YBR073W

RDH54

0.0053

0.0116

6.2e-5

+

YGR044C

RME1

0.0009

0.0720

6.8e-5

+f

YGL248W

PDE1

0.0182

0.0040

7.3e-5

+

YPL038W

MET31

0.0292

0.0027

8.0e-5

+

YDR088C

SLU7

0.0303

0.0038

1.2e-4

-

YGL052W

 

0.0117

0.0109

1.3e-4

-

YJL157C

FAR1

0.0013

0.1141

1.4e-4

+

YPR122W

AXL1

0.0091

0.0163

1.5e-4

+f

YIL099W

SGA1

0.0063

0.0267

1.7e-4

-

YLR233C

EST1

0.0226

0.0090

2.0e-4

-

YKL182W

FAS1

0.0578

0.0035

2.1e-4

-

YMR053C

STB2

0.0028

0.0884

2.5e-4

-

YNL319W

 

0.0123

0.0222

2.7e-4

-

YFR012W

 

0.0088

0.0125

2.8e-4

-

YNL188W

KAR1

0.0019

0.1890

3.6e-4

-

YGL193C

 

0.0014

0.2654

3.8e-4

-

YMR157C

FMP39

0.1557

0.0026

4.0e-4

-

YBR158W d

AMN1

0.0037

0.0221

8.7e-5

+

YCL066W e

MAT α 1

0.1630

0.9510

1.5e-1

+f

  1. a The ranking of haploid-specific gene expression determined by analysis of microarray data [11].
  2. b The ranking of potential a 1-α 2 target of haploid-specific genes.
  3. c A + indicates that the a 1-α 2 binds to the promoter by ChIP assay.
  4. d Identified in a search for sites with 1500 bp from the start of the ORF
  5. e Identified if remove the penalty for expression in one haploid cell type but not the other.
  6. f Identified as direct targets of the a 1-α 2 repressor complex in previous studies.