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Table 1 Potential a 1-α 2 Binding Sites in Haploid-specific Genes

From: Combined analysis of expression data and transcription factor binding sites in the yeast genome

ORF Gene Expression p-vala Binding p-valb Combined p-val a1-α 2 ChIPc
YDL227C HO 0.0006 0.0017 1.1e-6 +f
YLR265C NEJ1 0.0003 0.0053 1.7e-6 +
YBL016W FUS3 0.0001 0.0991 1.6e-5+  
YOR212W STE4 0.0020 0.0082 1.7e-5 +
YJR086W STE18 0.0008 0.0218 1.7e-5 +
YHR005C GPA1 0.0005 0.0437 2.1e-5 +
YDR103W STE5 0.0017 0.0298 5.2e-5 +
YBR073W RDH54 0.0053 0.0116 6.2e-5 +
YGR044C RME1 0.0009 0.0720 6.8e-5 +f
YGL248W PDE1 0.0182 0.0040 7.3e-5 +
YPL038W MET31 0.0292 0.0027 8.0e-5 +
YDR088C SLU7 0.0303 0.0038 1.2e-4 -
YGL052W   0.0117 0.0109 1.3e-4 -
YJL157C FAR1 0.0013 0.1141 1.4e-4 +
YPR122W AXL1 0.0091 0.0163 1.5e-4 +f
YIL099W SGA1 0.0063 0.0267 1.7e-4 -
YLR233C EST1 0.0226 0.0090 2.0e-4 -
YKL182W FAS1 0.0578 0.0035 2.1e-4 -
YMR053C STB2 0.0028 0.0884 2.5e-4 -
YNL319W   0.0123 0.0222 2.7e-4 -
YFR012W   0.0088 0.0125 2.8e-4 -
YNL188W KAR1 0.0019 0.1890 3.6e-4 -
YGL193C   0.0014 0.2654 3.8e-4 -
YMR157C FMP39 0.1557 0.0026 4.0e-4 -
YBR158W d AMN1 0.0037 0.0221 8.7e-5 +
YCL066W e MAT α 1 0.1630 0.9510 1.5e-1 +f
  1. a The ranking of haploid-specific gene expression determined by analysis of microarray data [11].
  2. b The ranking of potential a 1-α 2 target of haploid-specific genes.
  3. c A + indicates that the a 1-α 2 binds to the promoter by ChIP assay.
  4. d Identified in a search for sites with 1500 bp from the start of the ORF
  5. e Identified if remove the penalty for expression in one haploid cell type but not the other.
  6. f Identified as direct targets of the a 1-α 2 repressor complex in previous studies.