Table 3 Test for rotated plates. a) Plate rotation results from the rank matrices R and R' . The flagged comparisons indicate a plate rotation for plate p. b) Plate rotation distance matrix comparison. The data meet the criteria for a plate rotation.
From: A method for detecting and correcting feature misidentification on expression microarrays
a) | A1 v B | A2 v C | A3 v D | A4 v E | ||||
|---|---|---|---|---|---|---|---|---|
Plates | R_{mm} | R'_{mm} | R_{mm} | R'_{mm} | R_{mm} | R'_{mm} | R_{mm} | R'_{mm} |
{i, i} | 1 | 102 | 1 | 95 | 1 | 82 | 1 | 93 |
{j, j} | 1 | 18 | 1 | 102 | 1 | 16 | 1 | 64 |
{k, k} | 1 | 52 | 1 | 99 | 1 | 102 | 1 | 41 |
{l, l} | 6 | 108 | 3 | 35 | 9 | 76 | 1 | 22 |
{m, m} | 1 | 51 | 1 | 79 | 1 | 85 | 1 | 68 |
{n, n} | 1 | 14 | 1 | 35 | 1 | 41 | 1 | 93 |
{o, o} | 1 | 92 | 1 | 92 | 1 | 102 | 1 | 76 |
{p, p} | 78 | 1 | 48 | 1 | 46 | 1 | 65 | 1 |
{q, q} | 1 | 117 | 1 | 96 | 1 | 87 | 1 | 111 |
{r, r} | 1 | 118 | 1 | 110 | 1 | 115 | 1 | 112 |
{s, s} | 1 | 116 | 1 | 108 | 1 | 109 | 1 | 113 |
{t, t} | 1 | 69 | 1 | 93 | 3 | 20 | 1 | 103 |
{u, u} | 1 | 116 | 1 | 103 | 1 | 72 | 1 | 84 |
{v, v} | 1 | 83 | 1 | 104 | 1 | 85 | 1 | 64 |
b) | A1 v B | A2 v C | A3 v D | A4 v E | ||||
D_{mm} | D'_{mm} | D_{mm} | D'_{mm} | D_{mm} | D'_{mm} | D_{mm} | D'_{mm} | |
MEAN | 0.26 | 0.96 | 0.23 | 0.88 | 0.19 | 0.81 | 0.21 | 0.88 |
SD | 0.14 | 0.1 | 0.14 | 0.14 | 0.1 | 0.17 | 0.13 | 0.14 |
{pp} | 0.95 | 0.84 | 0.85 | 0.97 | ||||
{pp} | 0.21 | 0.14 | 0.23 | 0.24 | ||||
P-value | 4.10E-07 | 3.20E-14 | 6.60E-06 | 6.30E-08 | 2.10E-11 | 3.20E-04 | 2.50E-09 | 2.40E-06 |