|
Chr.2
|
Accession Number
|
ERTBV position (length)3
|
Cluster4
|
alignment of gene5
|
AT-repeated sequence6
|
|---|
| | | | |
Intergenic region
|
Region x
|
ORF y (MP/CP/PR)
|
ORF y (RT/RH)
|
ORF z
|
5'-end
|
3'-end
|
|---|
| |
[Japonica]
| | | | | | | | | |
|
1
|
AP003338
|
31237-38745 (7509)
|
C
|
32277-31237
|
38711-38217
|
38259-34814
|
34534-33094
|
33127-32278
|
34 (2)
|
153 (0)
|
| | | | |
38745-38712
| | | | | | |
|
2
|
AP006160a
|
128189-135399a
|
C
|
128189-128420a
|
128421-128915a
|
128873-129447a
|
134248-132808a
|
132841-131989a
|
97 (0)a
|
12 (0)b
|
| |
AP004842b
|
1-7610b(11686)
| |
131988-131526a
|
7379-6885b
|
130212-131451a
| | | | |
| | | | |
135399-134914a
| |
134913-134534a
| | | | |
| | | | |
7610-7380b
| |
5595-3136b
| | | | |
| | | | | | |
6927-6352b
| | | | |
|
4
|
AL606628
|
47001-48868 (1868)
|
B
|
-
|
-
|
47001-47054
|
47334-48768
|
48756-48868
|
16 (0)
|
45 (391)
|
| |
AL606618
|
82165-88112 (5948)
|
B
|
-
|
88112-87631
|
87673-84239
|
83959-82532
|
82544-82165
|
13 (678)
|
156 (48)
|
| |
AL606592
|
36282-40413 (4132)
|
B
|
39437-40413
|
-
|
36282-36894
|
37174-38614
|
38602-39436
|
65 (0)
|
101 (17)
|
| |
AL662971
|
104278-111739 (7462)
|
C
|
105283-104278
|
111720-111226
|
111268-107823
|
107543-106102
|
106135-105284
|
65 (727)
|
-
|
| | | | |
111739-111721
| | | | | | |
| |
AL607003
|
63290-71598 (8309)
|
A
|
63406-64469
|
64470-64882
|
64846-68248
|
68532-69972
|
63290-63405
|
52 (68)
|
151 (265)
|
| | | | |
70794-71598
| | | |
69939-70793
| | |
|
5
|
AC107085
|
22244-29756 (7513)
|
B
|
22436-22244
|
28859-28374
|
28416-24971
|
24691-23258
|
23270-22437
|
25 (0)
|
55 (64)
|
| | | | |
29756-28860
| | | | | | |
|
6
|
AP002542
|
33961-41438 (7478)
|
B
|
39087-38121
|
38120-37636
|
37678-34233
|
39121-40541
|
40529-41362
|
216 (2)
|
252 (1)
|
| | | | |
41363-41438
| | | | | | |
| |
AP006056
|
28996-33700 (4705)
|
C
|
29562-28996
|
-
|
33700-32101
|
31821-30381
|
30414-29563
|
93 (10)
|
337 (87)
|
| |
AP004750
|
97242-104472 (7231)
|
A
|
98061-97242
|
104472-103986
|
104022-100607
|
100323-98883
|
98916-98062
|
39 (178)
|
52 (694)
|
|
7
|
AP006163
|
118513-126010 (7498)
|
C
|
118513-118518
|
118519-119013
|
118971-122416
|
122696-124136
|
124103-124954
|
82 (502)
|
224 (129)
|
| | | | |
124955-126010
| | | | | | |
| |
AP005719
|
363-7932 (7570)
|
C
|
3278-2211
|
2210-1716
|
1758-363
|
5526-4096
|
4129-3279
|
65 (100)
|
33 (2)
|
| | | | | | |
7932-5806
| | | | |
| |
AP004348
|
17568-24897 (7330)
|
A
|
18513-17568
|
24897-24437
|
24473-21059
|
20775-19335
|
19368-18514
|
96 (100)
|
37 (20)
|
|
8
|
AP005164
|
171654-179236 (7583)
|
C
|
173775-174838
|
174839-175333
|
175291-178760
|
171654-172956
|
172923-173774
|
52 (284)
|
274 (11)
|
| | | | | | | |
179071-179236
| | | |
| |
AP003883
|
117668-125143 (7476)
|
C
|
117668-117743
|
117744-118238
|
118196-121641
|
121921-123361
|
123328-124179
|
54 (612)
|
41 (16)
|
| | | | |
124180-125143
| | | | | | |
| |
AP003914
|
22973-25201 (2229)
|
A
|
-
|
-
|
-
|
23074-24514
|
24481-25201
|
373 (14)
|
1136 (0)
|
| |
AP005301
|
34330-41566 (7237)
|
A
|
34330-34741
|
34742-35228
|
35192-38611
|
38895-40314
|
40281-41135
|
153 (14)
|
34 (23)
|
| | | | |
41136-41566
| | | | | | |
| |
AP005159
|
88879-97300 (8422)
|
B
|
88879-89828
|
89829-90315
|
90273-93716
|
93996-95435
|
95423-96256
|
179 (0)
|
34 (19)
|
| | | | |
96257-97300
| | | | | | |
|
9
|
AP005424
|
11998-18576 (6579)
|
C
|
18576-17867
|
11998-12492
|
12450-15849
|
16129-17569
|
17536-17833
|
57 (10)
|
95 (225)
|
| |
AP005860
|
50709-58281 (7573)
|
A
|
50709-50806
|
50807-51295
|
51259-54579
|
54863-56304
|
56271-57124
|
218 (0)
|
8 (3)
|
| | | | |
57125-58281
| | | | | | |
|
10
|
AC119147
|
89355-102382 (13028)
|
B
|
90235-89355
|
101319-100834
|
99260-96143
|
95863-94424
|
94436-93603
|
71 (0)
|
183 (68)
|
| | | | |
93602-93432
| |
100876-100548
| | | | |
| | | | |
102382-101320
| | | | | | |
| |
AC027660
|
24299-31769 (7471)
|
A
|
29370-28257
|
28256-27768
|
27804-24390
|
31632-30192
|
30225-29371
|
-
|
28 (520)
|
| |
AC069300
|
89901-96619 (6719)
|
A
|
90209-89901
|
96619-96133
|
96169-92755
|
92471-91031
|
91064-90210
|
21 (162)
|
21 (688)
|
|
11
|
AC135957
|
69527-81251 (11725)
|
A
|
73392-74286
|
81251-80765
|
69527-70846
|
71130-72570
|
72537-73391
|
368 (619)
|
-
|
| | | | |
75398-74475
| |
80801-77387
| |
75444-75410
| | |
|
12
|
AL713945
|
45991-49426 (3436)
|
B
|
47029-45991
|
-
|
-
|
49291-47851
|
47863-47030
|
55 (1)
|
261 (9)
|
| |
AL731743
|
14231-18608 (4378)
|
B
|
17596-18608
|
14768-14283
|
14325-14231
|
15333-16774
|
16762-17595
|
-
|
44 (40)
|
| | | | | | |
14791-15053
| | | | |
| |
AL928780
|
103187-110757 (7571)
|
A
|
103187-103406
|
103407-103893
|
103857-107273
|
107665-109105
|
109072-109926
|
44 (25)
|
25 (32)
|
| | | | |
109927-110757
| | | | | | |
| |
AL928749
|
6275-11538 (5264)
|
A
|
7149-6275
|
-
|
11538-9695
|
9411-7971
|
8004-7150
|
479 (127)
|
624 (0)
|
| |
[Indica]
| | | | | | | | | |
|
4
|
AB124591
|
554-4677(4124)
|
B
|
3709-4677
|
-
|
554-1166
|
1446-2886
|
2874-3708
|
43(0)
|
105(26)
|
|
ND
|
AB124592
|
8867-14510(5644)
|
C
|
10990-12051
|
12052-12546
|
12504-14510
|
8867-10171
|
10138-10989
|
64(273)
|
unknown
|
|
ND
|
AB124593
|
158-5914(5757)
|
C
|
4214-5914
|
-
|
158-1677
|
1957-3397
|
3364-4213
|
157(0)
|
62(2)
|
- 1 The sequences were mined from Japonica database or investigated from phage clones isolated from Indica (IR36) genomic library.
- 2 Chromosome no. on which the ERTBV segment resides.
- 3 Nucleotide positions of ERTBV in the registered genomic clone. Parenthesis indicates a length of ERTBV sequence.
- 4 Clusters into which the individual ERTBV sequences were phylogenetically grouped.
- 5 The region belongs to the part of ERTBV, and their nucleotide positions in the clone registered in the database.
- 6 The numbers indicate repetition times of AT at both the ends of ERTBV, and parenthesis indicates distance (bp) from the ERTBV.
- a and b These clones contain the identical ERTBV, but both the clones ended within the ERTBV sequence.
