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Table 1 Summary of the ERTBV structures in the rice genomes1.
| Chr.2 | Accession Number | ERTBV position (length)3 | Cluster4 | alignment of gene5 | AT-repeated sequence6 | |||||
|---|---|---|---|---|---|---|---|---|---|---|
| Intergenic region | Region x | ORF y (MP/CP/PR) | ORF y (RT/RH) | ORF z | 5'-end | 3'-end | ||||
| [Japonica] | ||||||||||
| 1 | AP003338 | 31237-38745 (7509) | C | 32277-31237 | 38711-38217 | 38259-34814 | 34534-33094 | 33127-32278 | 34 (2) | 153 (0) |
| 38745-38712 | ||||||||||
| 2 | AP006160a | 128189-135399a | C | 128189-128420a | 128421-128915a | 128873-129447a | 134248-132808a | 132841-131989a | 97 (0)a | 12 (0)b |
| AP004842b | 1-7610b(11686) | 131988-131526a | 7379-6885b | 130212-131451a | ||||||
| 135399-134914a | 134913-134534a | |||||||||
| 7610-7380b | 5595-3136b | |||||||||
| 6927-6352b | ||||||||||
| 4 | AL606628 | 47001-48868 (1868) | B | - | - | 47001-47054 | 47334-48768 | 48756-48868 | 16 (0) | 45 (391) |
| AL606618 | 82165-88112 (5948) | B | - | 88112-87631 | 87673-84239 | 83959-82532 | 82544-82165 | 13 (678) | 156 (48) | |
| AL606592 | 36282-40413 (4132) | B | 39437-40413 | - | 36282-36894 | 37174-38614 | 38602-39436 | 65 (0) | 101 (17) | |
| AL662971 | 104278-111739 (7462) | C | 105283-104278 | 111720-111226 | 111268-107823 | 107543-106102 | 106135-105284 | 65 (727) | - | |
| 111739-111721 | ||||||||||
| AL607003 | 63290-71598 (8309) | A | 63406-64469 | 64470-64882 | 64846-68248 | 68532-69972 | 63290-63405 | 52 (68) | 151 (265) | |
| 70794-71598 | 69939-70793 | |||||||||
| 5 | AC107085 | 22244-29756 (7513) | B | 22436-22244 | 28859-28374 | 28416-24971 | 24691-23258 | 23270-22437 | 25 (0) | 55 (64) |
| 29756-28860 | ||||||||||
| 6 | AP002542 | 33961-41438 (7478) | B | 39087-38121 | 38120-37636 | 37678-34233 | 39121-40541 | 40529-41362 | 216 (2) | 252 (1) |
| 41363-41438 | ||||||||||
| AP006056 | 28996-33700 (4705) | C | 29562-28996 | - | 33700-32101 | 31821-30381 | 30414-29563 | 93 (10) | 337 (87) | |
| AP004750 | 97242-104472 (7231) | A | 98061-97242 | 104472-103986 | 104022-100607 | 100323-98883 | 98916-98062 | 39 (178) | 52 (694) | |
| 7 | AP006163 | 118513-126010 (7498) | C | 118513-118518 | 118519-119013 | 118971-122416 | 122696-124136 | 124103-124954 | 82 (502) | 224 (129) |
| 124955-126010 | ||||||||||
| AP005719 | 363-7932 (7570) | C | 3278-2211 | 2210-1716 | 1758-363 | 5526-4096 | 4129-3279 | 65 (100) | 33 (2) | |
| 7932-5806 | ||||||||||
| AP004348 | 17568-24897 (7330) | A | 18513-17568 | 24897-24437 | 24473-21059 | 20775-19335 | 19368-18514 | 96 (100) | 37 (20) | |
| 8 | AP005164 | 171654-179236 (7583) | C | 173775-174838 | 174839-175333 | 175291-178760 | 171654-172956 | 172923-173774 | 52 (284) | 274 (11) |
| 179071-179236 | ||||||||||
| AP003883 | 117668-125143 (7476) | C | 117668-117743 | 117744-118238 | 118196-121641 | 121921-123361 | 123328-124179 | 54 (612) | 41 (16) | |
| 124180-125143 | ||||||||||
| AP003914 | 22973-25201 (2229) | A | - | - | - | 23074-24514 | 24481-25201 | 373 (14) | 1136 (0) | |
| AP005301 | 34330-41566 (7237) | A | 34330-34741 | 34742-35228 | 35192-38611 | 38895-40314 | 40281-41135 | 153 (14) | 34 (23) | |
| 41136-41566 | ||||||||||
| AP005159 | 88879-97300 (8422) | B | 88879-89828 | 89829-90315 | 90273-93716 | 93996-95435 | 95423-96256 | 179 (0) | 34 (19) | |
| 96257-97300 | ||||||||||
| 9 | AP005424 | 11998-18576 (6579) | C | 18576-17867 | 11998-12492 | 12450-15849 | 16129-17569 | 17536-17833 | 57 (10) | 95 (225) |
| AP005860 | 50709-58281 (7573) | A | 50709-50806 | 50807-51295 | 51259-54579 | 54863-56304 | 56271-57124 | 218 (0) | 8 (3) | |
| 57125-58281 | ||||||||||
| 10 | AC119147 | 89355-102382 (13028) | B | 90235-89355 | 101319-100834 | 99260-96143 | 95863-94424 | 94436-93603 | 71 (0) | 183 (68) |
| 93602-93432 | 100876-100548 | |||||||||
| 102382-101320 | ||||||||||
| AC027660 | 24299-31769 (7471) | A | 29370-28257 | 28256-27768 | 27804-24390 | 31632-30192 | 30225-29371 | - | 28 (520) | |
| AC069300 | 89901-96619 (6719) | A | 90209-89901 | 96619-96133 | 96169-92755 | 92471-91031 | 91064-90210 | 21 (162) | 21 (688) | |
| 11 | AC135957 | 69527-81251 (11725) | A | 73392-74286 | 81251-80765 | 69527-70846 | 71130-72570 | 72537-73391 | 368 (619) | - |
| 75398-74475 | 80801-77387 | 75444-75410 | ||||||||
| 12 | AL713945 | 45991-49426 (3436) | B | 47029-45991 | - | - | 49291-47851 | 47863-47030 | 55 (1) | 261 (9) |
| AL731743 | 14231-18608 (4378) | B | 17596-18608 | 14768-14283 | 14325-14231 | 15333-16774 | 16762-17595 | - | 44 (40) | |
| 14791-15053 | ||||||||||
| AL928780 | 103187-110757 (7571) | A | 103187-103406 | 103407-103893 | 103857-107273 | 107665-109105 | 109072-109926 | 44 (25) | 25 (32) | |
| 109927-110757 | ||||||||||
| AL928749 | 6275-11538 (5264) | A | 7149-6275 | - | 11538-9695 | 9411-7971 | 8004-7150 | 479 (127) | 624 (0) | |
| [Indica] | ||||||||||
| 4 | AB124591 | 554-4677(4124) | B | 3709-4677 | - | 554-1166 | 1446-2886 | 2874-3708 | 43(0) | 105(26) |
| ND | AB124592 | 8867-14510(5644) | C | 10990-12051 | 12052-12546 | 12504-14510 | 8867-10171 | 10138-10989 | 64(273) | unknown |
| ND | AB124593 | 158-5914(5757) | C | 4214-5914 | - | 158-1677 | 1957-3397 | 3364-4213 | 157(0) | 62(2) |
