Table 1 cDNA microarray data sets used in the study
From: Sample size for detecting differentially expressed genes in microarray experiments
Data set | Reference | # Rep | # Genes | Tissue type | Description | Hybridization |
|---|---|---|---|---|---|---|
A | Smith et al. 2003 | 20 | 15,592 | Human liver | Paired HCC tumor vs adjacent non-tumor | Direct hyb between tumor and non tumor |
B | Lapointe et al. 2004 | 41 | 38627 | Human prostate | Paired prostate tumor vs adjacent non-tumor | Indirect hyb using common reference |
C | Chen et al 2002 | 48 | 22618 | Human liver | Paired HCC+HBV vs HBV | Indirect hyb using common reference |
D | Pritchard et al. 2001 | 6 | 5281 | Mouse liver and kidney | Paired liver vs kidney | Indirect hyb using common reference |
E | Zhao et al. 2004 | 36 ductal + 21 lobular | 44549 | Human breast | lobular and ductal tumor tissue | Indirect hyb using common reference |
F | NA | 6 | 13, 056 | Mouse liver | One third vs two thirds hepatectomy | Indirect hyb using individual baseline |
G | Callow et al. 2000 | 8 | 5548 | Mouse liver | ApoAI knock-out vs normal | Indirect hyb using common reference (pool) |