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Table 1 Summary of Pfam domains

From: Bioinformatic mapping of AlkB homology domains in viruses

Classification

   

Pfam domainsb

Host

Family

Genus

na

AB

OT

PC

A1

ot

Plant

Bromoviridae

Alfamovirus

1

     
  

Bromovirus

4

    

4

  

Cucumovirus

3

     
  

Ilarvirus

11

     
  

Oleavirus

1

     
  

Unassigned

1

     
 

Closteroviridae

Ampelovirus

4

2

    
  

Closterovirus

5

  

1

  
  

Crinivirus

4

     
 

Flexiviridae 1

Allexivirus

5

1

    
  

Mandarivirus

1

1

    
  

Potexvirus

17

3

    
 

Flexiviridae 2

Capillovirus

3

  

3

 

3

  

Carlavirus

6

5

5

6

  
  

Foveavirus

6

5

6

6

  
  

Trichovirus

2

2

 

2

  
  

Vitivirus

2

2

    
  

Unassigned

2

1

2

2

  
 

Tymoviridae

Maculavirus

1

  

1

  
  

Marafivirus

3

  

3

 

3

  

Tymovirus

7

  

7

 

3

 

Unassigned

Benyvirus

2

  

2

  
  

Furovirus

4

     
  

Hordeivirus

1

     
  

Idaeovirus

1

     
  

Pecluvirus

1

     
  

Pomovirus

4

     
  

Tobamovirus

18

     
  

Tobravirus

3

     
  

Unassigned

2

     

Invertebrate

Tetraviridae

Betatetravirus

1

     
  

Unassigned

1

     

Vertebrate

Togaviridae

Alphavirus

17

   

17

2

 

Unassigend

Hepatitis E-like

2

   

2

 
  1. a Number of sequences.
  2. b Number of sequences with each domain type, excluding the common MT, HEL and RdRp domains (AB – AlkB, OT – OTU, PC – Peptidase C, A1 – A1pp, ot – other).
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BMC Genomics

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