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Table 2 General transcription factors predicted in this study in four Plasmodium species

From: Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes

 

P. falciparum

P. yoelii yoelii

P. chabaudii

P. berghei

Reciprocal Search

TFIIA large subunit

MAL7P1.78 197 aa

PY01022 57% N-ter 133 aa*

PC302380.00.0 57% N-ter 133 aa*

PB000347.02.0 59% N-ter 133 aa*

+

TFIIA small subunit

PFL2435w 131 aa

chrPyl_02265-4-2031-1630 71% tl 134 aa

PC403116.00.0 68% 43 aa (partim)

PB101071.00.0 63% 36 aa (partim)

B: A.thaliana (gi 1429228)

 

PFI1630c 184 aa°

PY01831 51%tl 200 aa

PC000365.00.0 80% tl 105 aa

PB001668.02.0 95% tl 200 aa

B: G. theta (gi 4583664)

TFIID Taf1

PFL1645w 3896 aa

PY03752 65% $ 3182 aa

PC000201.00.0 64% $ 1254 aa

PB000870.00.0 64% $ 843 aa

+

TFIID Taf2

MAL7P1.134 3351 aa

PY03343 80% $ 1684 aa

PC000872.02.0 80% $ 1353 aa

PB000540.02.0 78% $ 926 aa

+

TFIID Taf7

PFI1425w 397aa

PY04173 58% tl 321 aa

PC000532.04.0 56% tl 387 aa

PB000149.02.0 54% 325 aa

+

TFIID Taf10

PFE1110w 116 aa

?

genomic

PB108412.00.0 51% tl 93aa

B: O.sativa (gi 50726230)

TFIIE α-subunit

MAL7P1.86 400 aa

PY00824 57% tl 369 aa

PC000361.01.0 64% tl 386aa

PB000518.01.0 64% tl 381 aa

+

TFIIE β-subunit

MAL13P1.360 542 aa

PY01317 53% $ 2329 aa

PC103304.00.0 81% $ 207 aa

PB100065.00.0 54% $ 548 aa

B: S.cerevisiae (sp P36145)

TFIIF β-subunit

PF11_0458 317 aa

PY03467 60% tl 310 aa

?

PB000215.00.0 60% tl 175 aa*

B: C.parvum (gi 46228562)

TFIIH P62

MAL3P7.42 670 aa

PY00359 59% tl 674 aa

PC000077.04.0 62% tl 682 aa

PB000867.00.0 71% tl 343 aa

-

TFIIH TFB5

PF14_0398 67aa

chrPyl_00238-4-3595-3377 92% tl 73 aa

Pc_1897-6-1673-1455 92% tl 73 aa

PB000215.03.0 91% tl 67 aa

+

  1. The general transcription factors predicted in this study are listed with the corresponding sequences in Plasmodium yoelii yoelii, Plasmodium chabaudii and Plasmodium berghei. Reciprocal searches were performed using each predicted transcription factor, leading to the finding of similarities with the corresponding subunit in the crown group eukaryotes (see comments in the text; + stands for significant, B stands for background (E value >0.005)). The percentages of identity with the P. falciparum sequences are indicated (tl stands for calculated on the total length of the Plasmodium sequences), as well as the lengths of the considered protein sequences. $ : calculated on the similarity regions discussed in the text *: likely uncomplete sequence; °: presently corrected sequence; genomic: found in the genomic sequences, using TBASTN. 2.1.2.
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BMC Genomics

ISSN: 1471-2164

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