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Table 5a Performance of a dye combination in revealing modulated genes in B[a]P (3 μM) treated HepG2 cells using a cDNA array.

From: Application of four dyes in gene expression analyses by microarrays

  Cy5-Cy3 Cy3-A594 A488-Cy5 A594-A488
Cy5-Cy3 50*    
Cy3-A594 40 50   
A488-Cy5 25 35 50  
A594-A488 40 40 25 40
  1. * In bold the intersection of two gene lists indicating the modulated genes for a dye combination as percentage of all modulated genes (20 genes) found by analysis of all dye combinations combined. In italics the intersection of three gene lists indicating the modulated genes for two dye combinations as percentage of all modulated genes found for all dye combinations combined. The first dye was used for B[a]P treatment, the second for the control.